Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004475 Lotus japonicus HOM05D008547 ORTHO05D010515 7.3e-225 783.5 372 100.0
arahy.Tifrunner.gnm1.ann1.72JBMR Arachis hypogaea HOM05D008547 ORTHO05D010515 9.7e-137 490.7 372 65.3
arahy.Tifrunner.gnm1.ann1.MSS51R Arachis hypogaea HOM05D008547 ORTHO05D010515 1.7e-136 490.0 372 64.8
Medtr8g027525 Medicago truncatula HOM05D008547 ORTHO05D010515 1.1e-47 194.9 362 37.0
Medtr5g009560 Medicago truncatula HOM05D008547 ORTHO05D010515 7.9e-46 188.7 351 36.2
Medtr1g102770 Medicago truncatula HOM05D008547 ORTHO05D010515 8.7e-45 185.3 369 33.1
TPR.G16819 Trifolium pratense HOM05D008547 ORTHO05D010515 4.3e-44 183.0 399 33.3
Medtr5g090860 Medicago truncatula HOM05D008547 ORTHO05D010515 7.4e-44 182.2 363 32.0
Ca_23530_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 3.1e-42 176.8 392 32.4
Medtr8g027595 Medicago truncatula HOM05D008547 ORTHO05D010515 6.9e-42 175.6 394 34.3
Dinv12850 Davidia involucrata HOM05D006664 ORTHO05D009007 9.0e-42 175.3 344 34.0
TPR.G16823 Trifolium pratense HOM05D008547 ORTHO05D010515 9.0e-42 175.3 392 31.4
CSS0006076 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 2.6e-41 173.7 367 32.4
Dinv07586 Davidia involucrata HOM05D006664 ORTHO05D009007 3.4e-41 173.3 331 33.5
TPR.G39730 Trifolium pratense HOM05D008547 ORTHO05D010515 5.9e-41 172.6 395 33.2
CSS0029898 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 1.0e-40 171.8 367 31.6
Psat4g161600 Pisum sativum HOM05D008547 ORTHO05D010515 2.5e-39 167.2 386 31.6
Psat1g047400 Pisum sativum HOM05D008547 ORTHO05D010515 3.2e-39 166.8 395 31.6
TPR.G26111 Trifolium pratense HOM05D008547 ORTHO05D010515 7.2e-39 165.6 377 31.8
Psat4g161480 Pisum sativum HOM05D008547 ORTHO05D010515 1.5e-36 157.9 376 32.2
TPR.G12161 Trifolium pratense HOM05D008547 ORTHO05D010515 3.7e-35 153.3 364 32.1
TPR.G8333 Trifolium pratense HOM05D008547 ORTHO05D010515 4.1e-34 149.8 404 30.2
CSS0003999 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 1.5e-33 147.9 369 29.3
Ca_17126_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 3.4e-33 146.7 369 32.0
Dinv12853 Davidia involucrata HOM05D006664 ORTHO05D009007 4.5e-33 146.4 325 32.6
Medtr8g065650 Medicago truncatula HOM05D008547 ORTHO05D010515 7.7e-33 145.6 400 29.2
COL.COLO4_15201 Corchorus olitorius HOM05D008547 ORTHO05D010515 1.3e-32 144.8 239 36.8
TPR.G32061 Trifolium pratense HOM05D008547 ORTHO05D010515 2.9e-32 143.7 405 30.9
TPR.G27684 Trifolium pratense HOM05D008547 ORTHO05D010515 6.5e-32 142.5 320 31.9
Psat4g187360 Pisum sativum HOM05D008547 ORTHO05D010515 8.5e-32 142.1 381 28.6
Ca_15416_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 7.2e-31 139.0 364 32.1
Medtr5g090850 Medicago truncatula HOM05D008547 ORTHO05D010515 3.6e-30 136.7 309 30.4
Ca_15277_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 2.3e-29 134.0 404 30.2
CiPaw.05G236300 Carya illinoinensis HOM05D006664 ORTHO05D009007 1.4e-26 124.8 383 25.1
Ca_14816_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 4.5e-25 119.8 414 28.5
Medtr1g017800 Medicago truncatula HOM05D008547 ORTHO05D010515 1.0e-24 118.6 366 28.7
Psat4g206720 Pisum sativum HOM05D008547 ORTHO05D010515 6.5e-24 115.9 249 33.7
Medtr6g004080 Medicago truncatula HOM05D008547 ORTHO05D010515 1.4e-23 114.8 285 31.2
CiPaw.02G099600 Carya illinoinensis HOM05D006664 ORTHO05D009007 2.5e-23 114.0 423 27.2
COL.COLO4_24243 Corchorus olitorius HOM05D050221 ORTHO05D010515 7.2e-23 112.5 190 37.4
Actinidia38558 Actinidia chinensis HOM05D006664 ORTHO05D009007 9.4e-23 112.1 397 29.5
TPR.G23739 Trifolium pratense HOM05D008547 ORTHO05D010515 2.1e-22 110.9 230 30.9
TPR.G16818 Trifolium pratense HOM05D008547 ORTHO05D010515 1.1e-20 105.1 301 30.2
Migut.D00613 Erythranthe guttata HOM05D006664 ORTHO05D009007 4.4e-20 103.2 379 25.1
Migut.A00619 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.3e-19 101.7 354 23.2
Medtr5g012050 Medicago truncatula HOM05D008547 ORTHO05D010515 2.2e-19 100.9 174 37.9
Medtr3g023820 Medicago truncatula HOM05D008547 ORTHO05D010515 4.8e-19 99.8 169 34.9
Migut.A00598 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.4e-18 98.2 279 27.6
Migut.D00751 Erythranthe guttata HOM05D006664 ORTHO05D009007 3.1e-18 97.1 365 21.9
Rhsim08G0071800 Rhododendron simsii HOM05D006664 ORTHO05D009007 3.1e-18 97.1 252 29.0
Lj2A257T62 Lonicera japonica HOM05D006664 ORTHO05D009007 1.2e-17 95.1 250 27.6
SalBow1G6396 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.0e-16 92.0 279 24.7
SalBow1G2059 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.2e-16 90.9 275 26.2
SalBow1G7502 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.5e-15 88.2 283 25.8
Migut.A00618 Erythranthe guttata HOM05D006664 ORTHO05D009007 4.2e-15 86.7 309 25.2
Aqoxy4G00777 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 1.2e-14 85.1 366 26.8
SalBow1G2277 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.2e-14 85.1 285 26.0
SalBow1G3006 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.2e-14 85.1 279 25.8
Aqoxy4G00156 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 2.1e-14 84.3 241 27.4
SalBow1G3386 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.1e-14 84.3 288 24.0
SalBow1G5395 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.1e-14 84.3 266 24.4
SalBow1G1774 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.6e-14 83.6 271 26.2
TAR636G0594 Trochodendron aralioides HOM05D006664 ORTHO05D008819 3.6e-14 83.6 193 28.5
SalBow1G0567 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.7e-14 83.2 276 24.6
SalBow1G5956 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.7e-14 83.2 292 25.3
SalBow1G5785 Salvia bowleyana HOM05D006664 ORTHO05D009007 6.1e-14 82.8 269 25.7
MD02G1067600 Malus domestica HOM05D009792 ORTHO05D009073 8.0e-14 82.4 253 25.7
SalBow1G2147 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.4e-13 81.6 280 25.4
TPR.G21917 Trifolium pratense HOM05D008547 ORTHO05D010515 1.4e-13 81.6 160 33.1
Nn8g40182 Nelumbo nucifera HOM05D008437 ORTHO05D008819 2.3e-13 80.9 291 28.2
TPR.G38872 Trifolium pratense HOM05D008547 ORTHO05D010515 2.3e-13 80.9 291 28.5
SalBow1G5157 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.0e-13 80.5 278 25.9
SGA_v2.0_scaffold69G23259 Striga asiatica HOM05D006664 ORTHO05D009007 3.0e-13 80.5 178 32.0
Thecc.05G022700 Theobroma cacao HOM05D008437 ORTHO05D010577 5.2e-13 79.7 313 25.9
CiPaw.07G234400 Carya illinoinensis HOM05D007726 ORTHO05D008819 6.7e-13 79.3 408 27.0
SalBow1G3269 Salvia bowleyana HOM05D006664 ORTHO05D009007 6.7e-13 79.3 293 24.9
Actinidia13257 Actinidia chinensis HOM05D007726 ORTHO05D008819 1.2e-12 78.6 352 27.0
Aqoxy4G00159 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 1.2e-12 78.6 167 31.1
Aqoxy52s004 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 1.2e-12 78.6 190 28.9
Nn1g09439 Nelumbo nucifera HOM05D006664 ORTHO05D008819 2.0e-12 77.8 255 28.2
SalBow1G7640 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.6e-12 77.4 289 24.2
PSO210G1541 Papaver somniferum HOM05D000007 ORTHO05D000017 3.3e-12 77.0 274 25.5
SalBow1G6969 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.3e-12 77.0 266 26.7
SalBow1G4503 Salvia bowleyana HOM05D000486 ORTHO05D009007 4.4e-12 76.6 268 24.6
Nn1g09856 Nelumbo nucifera HOM05D006664 ORTHO05D009007 5.7e-12 76.3 192 29.7
COL.COLO4_27629 Corchorus olitorius HOM05D008437 ORTHO05D010577 2.2e-11 74.3 372 22.3
Lj7C388T5 Lonicera japonica HOM05D007726 ORTHO05D008819 2.8e-11 73.9 275 28.4
FvH4_4g07100 Fragaria vesca HOM05D000007 ORTHO05D009073 3.7e-11 73.6 293 24.2
SalBow1G1554 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.7e-11 73.6 294 24.5
Actinidia13258 Actinidia chinensis HOM05D007726 ORTHO05D008819 4.8e-11 73.2 340 24.4
Cpa.g.sc73.88 Carica papaya HOM05D006664 ORTHO05D009007 8.2e-11 72.4 269 28.6
FAN08G0648 Fragaria x ananassa HOM05D007726 ORTHO05D008819 8.2e-11 72.4 306 25.5
unitig_26.g8888 Utricularia gibba HOM05D000007 ORTHO05D000017 8.2e-11 72.4 291 25.8
Aqoxy6G01044 Aquilegia oxysepala HOM05D008437 ORTHO05D021355 1.1e-10 72.0 369 24.9
Rhsim11G0104400 Rhododendron simsii HOM05D007560 ORTHO05D005947 1.1e-10 72.0 244 28.3
Dinv16557 Davidia involucrata HOM05D000007 ORTHO05D009073 1.4e-10 71.6 287 26.1
FvH4_5g30670 Fragaria vesca HOM05D007726 ORTHO05D008819 1.8e-10 71.2 306 25.2
FAN18G4305 Fragaria x ananassa HOM05D007726 ORTHO05D008819 1.8e-10 71.2 306 25.2
PSO017G4597 Papaver somniferum HOM05D000007 ORTHO05D000676 1.8e-10 71.2 277 25.6
Actinidia22323 Actinidia chinensis HOM05D007726 ORTHO05D008819 2.4e-10 70.9 391 24.8
Aqoxy5G04106 Aquilegia oxysepala HOM05D007726 ORTHO05D008819 3.1e-10 70.5 126 36.5
CANSAT25G2565 Cannabis sativa HOM05D007726 ORTHO05D008819 3.1e-10 70.5 310 25.2
PSO832G0027 Papaver somniferum HOM05D000007 ORTHO05D000676 4.1e-10 70.1 284 25.0
Atru.chr13.2339 Acer truncatum HOM05D007726 ORTHO05D008819 7.0e-10 69.3 300 28.0
FAN13G1334 Fragaria x ananassa HOM05D007726 ORTHO05D008819 7.0e-10 69.3 306 25.2
Rhsim11G0103500 Rhododendron simsii HOM05D007560 ORTHO05D005947 9.1e-10 68.9 243 25.5
Os12g0164300 Oryza sativa ssp. japonica HOM05D000007 ORTHO05D000017 1.6e-09 68.2 292 25.0
Rhsim11G0104000 Rhododendron simsii HOM05D007560 ORTHO05D005947 3.5e-09 67.0 244 25.4
Dinv24637 Davidia involucrata HOM05D007726 ORTHO05D008819 4.5e-09 66.6 292 27.1
Lj8C38T12 Lonicera japonica HOM05D007560 ORTHO05D005947 4.5e-09 66.6 245 26.1
COL.COLO4_14611 Corchorus olitorius HOM05D008437 ORTHO05D010577 7.7e-09 65.9 258 25.2
Hma1.2p1_0244F.1_g101190 Hydrangea macrophylla HOM05D008437 ORTHO05D010577 1.0e-08 65.5 287 25.8
CSS0044623 Camellia sinensis var. sinensis HOM05D008437 ORTHO05D010577 1.3e-08 65.1 164 28.7
MD03G1174100 Malus domestica HOM05D000007 ORTHO05D000521 1.3e-08 65.1 276 23.9
Medtr5g013170 Medicago truncatula HOM05D008547 ORTHO05D010515 1.3e-08 65.1 103 33.0
PSO421G0154 Papaver somniferum HOM05D000007 ORTHO05D000676 1.3e-08 65.1 282 24.8
PSO421G0462 Papaver somniferum HOM05D000007 ORTHO05D000676 1.3e-08 65.1 282 24.8
PSO421G0646 Papaver somniferum HOM05D000007 ORTHO05D000676 1.3e-08 65.1 282 24.8
Medtr1g103170 Medicago truncatula HOM05D008547 ORTHO05D010515 1.7e-08 64.7 141 32.6
Solyc09g012020.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 2.2e-08 64.3 121 28.9
PSO421G0204 Papaver somniferum HOM05D004049 ORTHO05D004496 3.8e-08 63.5 286 23.4
TAR381G1565 Trochodendron aralioides HOM05D007726 ORTHO05D008819 3.8e-08 63.5 153 34.6
Rhsim11G0104100 Rhododendron simsii HOM05D007560 ORTHO05D005947 5.0e-08 63.2 161 26.1
Sopen03g021420 Solanum pennellii HOM05D008437 ORTHO05D010577 5.0e-08 63.2 152 26.3
Medtr8g027530 Medicago truncatula HOM05D008547 ORTHO05D010515 6.5e-08 62.8 124 35.5
Solyc03g078530.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 8.5e-08 62.4 152 26.3
COL.COLO4_32922 Corchorus olitorius HOM05D007560 ORTHO05D005947 1.5e-07 61.6 234 27.8
Aqoxy1G01388 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 2.5e-07 60.8 185 27.0
Migut.C01221 Erythranthe guttata HOM05D000007 ORTHO05D000521 2.5e-07 60.8 274 24.1
Psat4g188000 Pisum sativum HOM05D008547 ORTHO05D010515 2.5e-07 60.8 146 29.5
Rhsim11G0103400 Rhododendron simsii HOM05D007560 ORTHO05D005947 2.5e-07 60.8 149 28.9
Rhsim11G0104200 Rhododendron simsii HOM05D007560 ORTHO05D005947 3.2e-07 60.5 116 32.8
Sabra11G0123100 Salix brachista HOM05D000007 ORTHO05D000521 3.2e-07 60.5 142 32.4
Sopen09g006830 Solanum pennellii HOM05D008437 ORTHO05D010577 3.2e-07 60.5 152 25.7
PGSC0003DMG400046101 Solanum tuberosum HOM05D008437 ORTHO05D010577 3.2e-07 60.5 152 26.3
SalBow1G0552 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.2e-07 60.1 278 23.7
Eucgr.H02812 Eucalyptus grandis HOM05D000007 ORTHO05D000017 5.5e-07 59.7 134 33.6
Psat6g222080 Pisum sativum HOM05D000007 ORTHO05D000017 5.5e-07 59.7 258 23.3
MSTRG.25451 Avicennia marina HOM05D007726 ORTHO05D008819 7.2e-07 59.3 163 28.2
Solyc09g012010.1 Solanum lycopersicum HOM05D008437 ORTHO05D010577 7.2e-07 59.3 175 24.0
AUR62025056 Chenopodium quinoa HOM05D003636 ORTHO05D013299 9.4e-07 58.9 280 25.7
Peaxi162Scf00141g00138 Petunia axillaris HOM05D008437 ORTHO05D010577 9.4e-07 58.9 105 29.5
CAN.G1058.31 Capsicum annuum HOM05D000171 ORTHO05D000101 1.6e-06 58.2 199 26.6
SalBow1G7401 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.1e-06 57.8 106 29.2
Oeu000542.1 Olea europaea HOM05D007726 ORTHO05D008819 2.7e-06 57.4 141 33.3
AUR62031665 Chenopodium quinoa HOM05D003636 ORTHO05D013299 3.6e-06 57.0 280 25.7
Dinv01180 Davidia involucrata HOM05D000007 ORTHO05D000521 4.7e-06 56.6 131 29.8
Lj3P398T11 Lonicera japonica HOM05D000007 ORTHO05D000017 4.7e-06 56.6 245 24.9
CSS0013132 Camellia sinensis var. sinensis HOM05D007726 ORTHO05D008819 6.1e-06 56.2 171 31.0


User provided reference genes

Program Settings