Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 4.2e-139 498.4 334 100.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 6.7e-105 384.8 338 74.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 4.8e-103 378.6 331 74.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.1e-98 363.2 332 69.6
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.7e-98 362.8 332 78.0
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 5.2e-97 358.6 331 75.2
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 8.8e-97 357.8 339 74.0
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.7e-92 343.6 338 72.5
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 3.0e-89 332.8 338 66.6
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 9.8e-88 327.8 328 68.0
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 9.8e-88 327.8 328 70.4
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 8.3e-87 324.7 415 60.5
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.0e-85 320.1 331 68.3
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.3e-84 316.6 330 68.2
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.3e-83 312.8 330 67.3
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.3e-83 312.8 339 66.7
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.3e-83 312.4 341 66.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-82 310.8 345 64.3
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-82 310.8 345 64.3
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.2e-82 310.8 330 67.0
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.8e-82 309.7 339 65.8
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 2.8e-82 309.7 337 66.8
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 4.7e-82 308.9 330 66.1
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 8.0e-82 308.1 329 66.9
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.4e-81 307.4 329 66.0
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.4e-81 307.4 283 73.9
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.8e-81 307.0 338 64.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 2.3e-81 306.6 337 66.5
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.0e-81 306.2 349 63.6
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 3.0e-81 306.2 331 68.6
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 4.0e-81 305.8 281 75.1
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.0e-81 305.8 351 63.5
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.8e-81 305.1 353 63.2
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.0e-80 303.5 329 65.7
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.6e-80 303.1 356 61.8
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 4.4e-80 302.4 334 65.9
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 5.7e-80 302.0 345 63.2
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.3e-79 300.8 340 64.4
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.2e-79 300.1 283 73.5
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.9e-79 299.7 282 73.8
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.9e-79 299.7 334 63.8
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.7e-79 299.3 346 62.7
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.1e-78 297.7 327 65.7
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.1e-78 295.8 337 64.4
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 4.1e-78 295.8 332 64.2
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.0e-78 295.0 278 71.9
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 7.0e-78 295.0 352 61.9
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.2e-77 294.3 281 73.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 2.7e-77 293.1 282 74.1
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 7.8e-77 291.6 283 72.4
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.0e-76 291.2 354 54.8
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.0e-76 291.2 283 70.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-76 290.8 283 73.1
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.3e-76 290.8 283 73.1
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 6.6e-76 288.5 336 62.8
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 6.6e-76 288.5 341 61.0
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.6e-76 288.1 283 73.1
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.6e-76 288.1 283 70.7
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.1e-75 287.7 342 64.9
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.1e-75 287.7 342 62.0
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.1e-75 287.7 335 62.1
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.5e-75 287.3 337 62.9
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.5e-75 287.3 304 51.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.5e-75 287.3 339 62.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.9e-75 287.0 279 69.5
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 2.5e-75 286.6 283 69.3
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 4.3e-75 285.8 343 63.3
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 4.3e-75 285.8 340 64.1
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 7.3e-75 285.0 283 68.6
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 7.3e-75 285.0 283 70.0
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 9.5e-75 284.6 340 64.7
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.8e-74 283.1 282 70.9
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.6e-74 282.7 342 64.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.6e-74 282.7 348 60.6
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.0e-73 281.2 283 69.6
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.0e-73 281.2 335 61.8
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.3e-73 280.0 341 61.6
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.1e-73 279.6 283 70.3
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 4.0e-73 279.3 325 63.7
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.0e-72 276.9 330 61.8
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.6e-72 276.6 333 61.9
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 5.8e-72 275.4 283 69.6
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 4.9e-71 272.3 345 61.7
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 6.4e-71 271.9 283 68.9
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 6.4e-71 271.9 335 57.6
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 5.4e-70 268.9 345 58.6
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 7.8e-69 265.0 332 62.7
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.9e-67 260.4 339 59.0
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.4e-65 254.2 302 64.2
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.3e-65 253.4 283 57.6
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 5.2e-65 252.3 332 61.1
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.0e-64 250.4 331 60.1
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.9e-63 246.5 212 59.0
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 4.9e-63 245.7 232 53.0
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 8.3e-63 245.0 282 63.5
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 8.3e-63 245.0 279 67.4
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 1.4e-62 244.2 210 59.5
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.9e-62 243.8 160 73.1
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.2e-62 243.0 246 53.3
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.1e-62 242.7 328 59.5
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 6.6e-60 235.3 283 62.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.9e-59 233.8 350 55.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.5e-59 233.4 279 64.9
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.3e-59 233.0 329 58.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 9.5e-59 231.5 165 66.1
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 6.2e-58 228.8 178 69.1
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.4e-57 227.6 358 39.1
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.8e-57 227.3 305 60.3
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.2e-55 220.3 165 64.2
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 4.9e-55 219.2 240 70.8
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-53 214.2 331 55.6
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.6e-53 214.2 316 39.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.9e-46 190.7 276 58.7
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.6e-40 170.2 191 76.4
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.4e-40 169.9 264 57.6
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 4.5e-40 169.5 173 52.0
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 5.8e-40 169.1 241 62.2
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 6.4e-39 165.6 161 54.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.4e-38 163.7 214 44.9
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 3.2e-38 163.3 191 72.3
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.9e-35 154.1 286 52.1
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 6.4e-31 139.0 84 81.0
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.4e-30 137.1 180 45.0
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.7e-29 133.7 278 49.6
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.6e-29 132.9 179 44.7
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 3.0e-28 130.2 116 53.4
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.9e-28 129.8 179 43.6
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.7e-23 114.4 158 75.3
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 3.2e-22 110.2 64 84.4
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 5.5e-22 109.4 115 50.4
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.3e-19 99.8 142 77.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.2e-16 91.7 84 56.0
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-14 84.3 127 78.7
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-13 80.9 81 51.9
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.3e-12 77.4 163 50.9
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.4e-11 72.4 122 79.5
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 3.4e-08 63.5 37 81.1
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.7e-07 61.2 54 50.0
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 2.9e-07 60.5 62 50.0
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 6.5e-07 59.3 56 55.4
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-06 58.2 41 61.0
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 7.2e-06 55.8 52 50.0


User provided reference genes

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