Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 8.2e-51 203.4 99 100.0
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 2.7e-33 145.2 103 72.8
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 2.3e-32 142.1 100 70.0
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 1.1e-31 139.8 97 73.2
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 1.6e-30 136.0 100 71.0
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 1.0e-29 133.3 92 75.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 7.0e-26 120.6 105 68.6
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 5.0e-24 114.4 101 64.4
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.5e-23 112.1 97 59.8
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 1.6e-22 109.4 98 64.3
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.9e-18 95.9 98 55.1
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 3.5e-17 91.7 99 53.5
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 4.6e-17 91.3 101 55.4
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 6.0e-17 90.9 104 48.1
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.9e-16 88.2 95 51.6
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 6.6e-16 87.4 104 51.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 8.6e-16 87.0 99 50.5
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.5e-15 86.3 107 48.6
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.3e-15 85.1 101 47.5
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 1.6e-14 82.8 90 52.2
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 2.8e-14 82.0 111 44.1
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 3.6e-14 81.6 107 45.8
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 6.2e-14 80.9 106 43.4
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.1e-14 80.5 75 56.0
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.4e-13 79.7 50 72.0
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.4e-13 79.7 91 50.5
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.8e-13 79.3 95 46.3
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.8e-13 79.3 113 51.3
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 2.3e-13 79.0 87 52.9
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.3e-13 79.0 107 47.7
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 2.3e-13 79.0 115 45.2
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 2.3e-13 79.0 91 49.5
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 4.0e-13 78.2 103 52.4
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 6.8e-13 77.4 75 54.7
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.5e-12 76.3 109 44.0
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.0e-12 75.9 83 49.4
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.0e-12 75.9 80 46.2
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 2.6e-12 75.5 45 77.8
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.6e-12 75.5 106 45.3
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.6e-12 75.5 85 47.1
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.4e-12 75.1 112 42.9
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.4e-12 75.1 42 81.0
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 4.4e-12 74.7 93 47.3
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 9.9e-12 73.6 89 51.7
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 9.9e-12 73.6 96 44.8
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 2.2e-11 72.4 89 46.1
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 3.7e-11 71.6 83 51.8
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.7e-11 71.6 89 43.8
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.7e-11 71.6 106 43.4
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 4.9e-11 71.2 54 68.5
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 4.9e-11 71.2 98 49.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 8.3e-11 70.5 39 82.1
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 8.3e-11 70.5 101 41.6
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 8.3e-11 70.5 87 41.4
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 1.9e-10 69.3 92 45.7
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.4e-10 68.9 88 44.3
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.1e-10 68.2 100 45.0
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 4.1e-10 68.2 90 47.8
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 5.4e-10 67.8 99 40.4
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 5.4e-10 67.8 90 42.2
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 5.4e-10 67.8 94 43.6
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 9.2e-10 67.0 82 47.6
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.2e-10 67.0 37 83.8
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 9.2e-10 67.0 99 42.4
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 9.2e-10 67.0 84 45.2
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-09 66.2 100 44.0
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 2.1e-09 65.9 96 40.6
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.1e-09 65.9 100 44.0
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 2.7e-09 65.5 91 48.4
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.5e-09 65.1 96 38.5
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 4.6e-09 64.7 34 85.3
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 4.6e-09 64.7 83 47.0
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 6.0e-09 64.3 99 44.4
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.0e-09 64.3 37 78.4
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.0e-09 64.3 96 38.5
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 7.8e-09 63.9 89 40.4
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 1.3e-08 63.2 100 45.0
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 1.3e-08 63.2 94 44.7
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.3e-08 62.4 94 41.5
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 2.3e-08 62.4 94 41.5
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 2.3e-08 62.4 92 38.0
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 2.3e-08 62.4 100 38.0
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.9e-08 61.6 84 40.5
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 3.9e-08 61.6 35 77.1
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 3.9e-08 61.6 35 77.1
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 5.1e-08 61.2 50 54.0
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 6.6e-08 60.8 75 44.0
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 8.6e-08 60.5 68 48.5
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 8.6e-08 60.5 90 46.7
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.5e-07 59.7 102 37.3
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.5e-07 58.9 59 55.9
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 2.5e-07 58.9 81 40.7
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 2.5e-07 58.9 85 38.8
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 2.5e-07 58.9 85 37.6
arahy.Tifrunner.gnm1.ann1.91285J Arachis hypogaea HOM05D004965 ORTHO05D004401 3.3e-07 58.5 99 47.5
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 3.3e-07 58.5 75 40.0
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 5.6e-07 57.8 94 37.2
Oeu011717.2 Olea europaea HOM05D004965 ORTHO05D004401 5.6e-07 57.8 86 38.4
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 7.3e-07 57.4 40 67.5
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 7.3e-07 57.4 84 41.7
BcaB03g15521 Brassica carinata HOM05D010176 ORTHO05D012455 9.5e-07 57.0 94 37.2
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 9.5e-07 57.0 76 42.1
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 9.5e-07 57.0 74 40.5
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 9.5e-07 57.0 62 48.4
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.2e-06 56.6 91 40.7
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.2e-06 56.6 55 52.7
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 1.2e-06 56.6 50 56.0
Sabra08G0145000 Salix brachista HOM05D004965 ORTHO05D004401 1.2e-06 56.6 74 47.3
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.2e-06 56.6 106 36.8
ClCG05G024840 Citrullus lanatus HOM05D031204 ORTHO05D004401 1.6e-06 56.2 89 39.3
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 2.1e-06 55.8 29 86.2
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 2.1e-06 55.8 96 36.5
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.1e-06 55.8 36 72.2
AL2G29210 Arabidopsis lyrata HOM05D010176 ORTHO05D012455 2.8e-06 55.5 96 38.5
CARHR063070 Cardamine hirsuta HOM05D010176 ORTHO05D012455 2.8e-06 55.5 99 37.4
Thhalv10019352m.g Eutrema salsugineum HOM05D010176 ORTHO05D012455 2.8e-06 55.5 96 37.5
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 2.8e-06 55.5 34 70.6
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 3.6e-06 55.1 82 45.1
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 3.6e-06 55.1 104 38.5
Solyc01g011105.1 Solanum lycopersicum HOM05D004965 ORTHO05D004401 3.6e-06 55.1 36 69.4
TWI75G1371 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 3.6e-06 55.1 115 38.3
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 8.1e-06 53.9 95 37.9
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 8.1e-06 53.9 99 35.4


User provided reference genes

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