Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 5.6e-69 264.2 140 100.0
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.6e-68 262.7 140 99.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.9e-61 239.2 140 90.7
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.2e-60 236.5 137 89.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 3.6e-60 235.0 137 88.3
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 3.6e-60 235.0 137 88.3
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 4.7e-60 234.6 141 87.9
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 6.2e-60 234.2 140 87.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 8.1e-60 233.8 137 89.8
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.1e-59 233.4 140 86.4
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.4e-59 233.0 140 87.1
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.2e-57 225.7 137 84.7
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.2e-57 225.7 137 86.9
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.2e-57 225.7 137 89.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.3e-57 223.8 137 85.4
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.3e-57 223.8 137 85.4
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.1e-56 223.4 137 85.4
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.4e-56 223.0 137 84.7
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.9e-56 222.6 137 85.4
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 4.1e-56 221.5 139 85.6
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.1e-56 220.7 137 83.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 7.1e-56 220.7 137 83.2
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 9.2e-56 220.3 137 83.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.6e-55 219.5 137 83.2
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.1e-55 219.2 137 83.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.1e-55 219.2 175 71.4
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.7e-55 218.8 139 83.5
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.6e-55 218.0 137 83.2
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 4.6e-55 218.0 138 85.5
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 6.0e-55 217.6 137 83.2
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 7.8e-55 217.2 137 83.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.3e-54 215.7 138 83.3
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.0e-54 215.3 138 83.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.0e-54 215.3 139 82.7
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.0e-54 215.3 138 82.6
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.9e-54 214.9 140 82.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.9e-54 214.9 139 82.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 5.1e-54 214.5 137 81.0
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.6e-54 214.2 138 82.6
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 6.6e-54 214.2 138 82.6
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 8.6e-54 213.8 138 82.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 8.6e-54 213.8 137 82.5
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 81.9
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.5e-53 212.2 140 81.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.5e-53 212.2 137 81.8
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.3e-53 211.8 138 82.6
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 3.3e-53 211.8 138 81.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 5.6e-53 211.1 137 81.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 5.6e-53 211.1 141 80.9
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.5e-53 210.3 137 79.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.1e-52 209.1 139 81.3
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 81.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 81.9
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.1e-52 209.1 137 78.8
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.8e-52 208.8 138 81.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.8e-52 208.8 137 78.8
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.6e-52 208.4 139 79.9
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 4.7e-52 208.0 138 80.4
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 8.1e-52 207.2 140 79.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 8.1e-52 207.2 139 79.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-51 206.8 138 79.7
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.4e-51 206.5 137 78.8
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.8e-51 206.1 137 77.4
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.3e-51 205.7 137 76.6
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 5.2e-51 204.5 139 78.4
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 77.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.2e-51 204.5 137 76.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 6.8e-51 204.1 143 79.0
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 6.8e-51 204.1 142 76.8
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 8.9e-51 203.8 139 79.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.5e-50 203.0 143 78.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 2.0e-50 202.6 139 77.7
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 2.0e-50 202.6 137 79.6
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 2.6e-50 202.2 140 76.4
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 4.4e-50 201.4 139 77.0
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.4e-50 201.4 139 77.7
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 5.8e-50 201.1 139 76.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.7e-49 199.5 146 73.3
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.2e-49 199.1 138 77.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.2e-49 199.1 138 77.5
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 76.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 5.4e-48 194.5 114 88.6
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 7.1e-48 194.1 147 72.8
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 7.1e-48 194.1 150 72.7
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 7.1e-48 194.1 150 72.7
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-47 193.4 143 72.0
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-47 192.2 148 73.0
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 3.5e-47 191.8 140 76.4
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.5e-47 191.8 163 66.9
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.0e-47 191.0 143 71.3
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 7.8e-47 190.7 139 74.1
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.8e-47 190.7 151 69.5
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.0e-46 190.3 145 70.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.3e-46 189.9 147 70.1
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.0e-46 188.7 137 75.2
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 3.0e-46 188.7 139 73.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 6.6e-46 187.6 159 66.0
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.1e-45 186.8 140 74.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 2.5e-45 185.7 151 68.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 4.3e-45 184.9 137 70.8
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 5.6e-45 184.5 176 61.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 5.6e-45 184.5 154 67.5
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 5.6e-45 184.5 154 67.5
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 9.6e-45 183.7 168 62.5
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 9.6e-45 183.7 137 73.0
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-44 182.6 138 71.7
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.1e-43 180.3 136 74.3
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.0e-42 176.0 112 83.0
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.6e-42 175.6 136 65.4
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 5.8e-42 174.5 135 72.6
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.2e-41 172.6 113 81.4
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 4.2e-40 168.3 136 63.2
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 9.3e-40 167.2 134 70.1
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 7.8e-39 164.1 166 53.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-38 162.9 115 75.7
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.5e-37 159.8 137 63.5
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 9.6e-37 157.1 119 72.3
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-36 156.4 113 75.2
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.8e-35 152.9 120 70.8
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 6.9e-35 151.0 136 59.6
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.0e-34 149.4 128 69.5
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 6.4e-33 144.4 131 64.1
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 9.3e-32 140.6 135 61.5
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 7.9e-31 137.5 85 84.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.0e-30 137.1 135 62.2
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.0e-30 137.1 156 56.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.8e-30 136.3 169 50.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 2.3e-30 136.0 110 68.2
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 8.7e-30 134.0 97 74.2
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.1e-29 133.7 85 82.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 9.6e-29 130.6 109 68.8
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 2.1e-28 129.4 138 54.3
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.1e-28 129.4 80 86.2
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.4e-27 125.9 116 62.1
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 9.0e-27 124.0 79 82.3
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.5e-26 123.2 79 83.5
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.5e-26 123.2 79 82.3
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 7.6e-26 120.9 77 84.4
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.7e-25 119.8 76 85.5
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.9e-24 116.3 69 88.4
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 9.3e-24 114.0 137 50.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 9.3e-24 114.0 115 60.0
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 3.5e-23 112.1 68 85.3
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-21 107.1 129 50.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.1e-19 100.5 70 74.3
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-19 99.4 69 72.5
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 5.3e-19 98.2 99 58.6
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.2e-16 88.6 58 79.3
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.1e-15 86.3 68 67.6
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 7.9e-15 84.3 56 78.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 7.9e-15 84.3 77 61.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 3.3e-13 79.0 130 37.7
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 6.9e-11 71.2 72 55.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 6.9e-11 71.2 72 55.6
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 8.5e-09 64.3 58 60.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-08 62.0 51 58.8
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-08 62.0 49 61.2
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 7.2e-08 61.2 51 58.8
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-06 54.3 44 65.9


User provided reference genes

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