Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.8e-41 172.2 86 100.0
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 2.2e-20 102.1 85 60.0
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.9e-20 101.7 85 63.5
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 3.8e-20 101.3 85 65.9
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 5.0e-20 100.9 83 61.4
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.1e-19 99.8 84 60.7
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.5e-19 99.4 83 57.8
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.9e-19 99.0 85 65.9
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.5e-19 98.6 84 58.3
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 3.2e-19 98.2 84 63.1
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 4.2e-19 97.8 84 57.1
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 9.4e-19 96.7 84 53.6
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 9.4e-19 96.7 84 57.1
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 9.4e-19 96.7 84 58.3
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.7e-18 95.1 83 55.4
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 4.7e-18 94.4 84 58.3
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 6.1e-18 94.0 85 56.5
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 8.0e-18 93.6 83 51.8
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 8.0e-18 93.6 84 60.7
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 8.0e-18 93.6 84 57.1
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 8.0e-18 93.6 84 56.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.0e-17 93.2 86 58.1
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.8e-17 92.4 87 52.9
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.8e-17 92.4 84 54.8
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 4.0e-17 91.3 85 52.9
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 5.2e-17 90.9 83 50.6
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 8.8e-17 90.1 85 51.8
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 8.8e-17 90.1 83 55.4
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 8.8e-17 90.1 68 60.3
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.2e-16 89.7 85 51.8
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.5e-16 89.4 83 53.0
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.5e-16 89.4 84 56.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.5e-16 89.4 84 56.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.5e-16 89.4 84 56.0
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 1.5e-16 89.4 84 51.2
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 2.6e-16 88.6 86 51.2
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 2.6e-16 88.6 86 51.2
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 3.4e-16 88.2 85 50.6
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 3.4e-16 88.2 74 59.5
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 3.4e-16 88.2 82 52.4
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 4.4e-16 87.8 85 50.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 5.7e-16 87.4 85 57.6
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 9.8e-16 86.7 84 52.4
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 2.2e-15 85.5 81 51.9
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.2e-15 85.5 84 53.6
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.8e-15 84.3 82 46.3
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 6.3e-15 84.0 88 48.9
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 6.3e-15 84.0 86 52.3
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.3e-15 84.0 85 48.2
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 1.8e-14 82.4 84 57.1
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.8e-14 82.4 81 50.6
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.8e-14 82.4 85 51.8
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.8e-14 82.4 85 51.8
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.8e-14 82.4 85 51.8
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.8e-14 82.4 83 48.2
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.4e-14 82.0 84 44.0
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.4e-14 82.0 82 48.8
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 3.1e-14 81.6 85 56.5
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 3.1e-14 81.6 84 57.1
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 3.1e-14 81.6 85 52.9
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 4.1e-14 81.3 84 46.4
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 4.1e-14 81.3 86 52.3
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 5.4e-14 80.9 63 58.7
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 7.0e-14 80.5 84 40.5
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 7.0e-14 80.5 84 48.8
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 7.0e-14 80.5 63 57.1
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 9.1e-14 80.1 86 48.8
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.6e-13 79.3 83 50.6
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.0e-13 79.0 69 50.7
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 2.7e-13 78.6 85 48.2
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 3.5e-13 78.2 84 51.2
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 3.5e-13 78.2 83 49.4
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.9e-13 77.4 86 51.2
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.3e-12 76.3 86 47.7
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.3e-12 76.3 79 49.4
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.7e-12 75.9 85 45.9
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.3e-12 75.5 84 46.4
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 2.9e-12 75.1 70 48.6
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 2.9e-12 75.1 70 48.6
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 2.9e-12 75.1 70 48.6
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 3.8e-12 74.7 84 52.4
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.8e-12 74.7 53 60.4
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 3.8e-12 74.7 84 51.2
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 5.0e-12 74.3 65 52.3
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 5.0e-12 74.3 65 52.3
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 5.0e-12 74.3 65 52.3
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 5.0e-12 74.3 67 52.2
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 5.0e-12 74.3 84 44.0
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 6.6e-12 73.9 85 43.5
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 6.6e-12 73.9 84 44.0
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 6.6e-12 73.9 65 52.3
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 8.6e-12 73.6 86 44.2
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 8.6e-12 73.6 85 43.5
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.1e-11 73.2 85 47.1
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-11 73.2 65 52.3
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.1e-11 73.2 86 44.2
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 1.1e-11 73.2 65 52.3
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.5e-11 72.8 86 40.7
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.9e-11 72.4 86 45.3
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 3.3e-11 71.6 77 48.1
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 3.3e-11 71.6 65 52.3
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.3e-11 71.6 56 57.1
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.3e-11 71.6 85 41.2
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.5e-11 70.9 85 45.9
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 7.2e-11 70.5 86 40.7
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 7.2e-11 70.5 84 41.7
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.2e-10 69.7 85 40.0
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.2e-10 69.7 63 49.2
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 1.2e-10 69.7 63 49.2
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.6e-10 69.3 85 37.6
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.6e-10 69.3 85 37.6
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.6e-10 69.3 76 51.3
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.6e-10 69.3 86 50.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.1e-10 68.9 84 45.2
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 2.1e-10 68.9 85 38.8
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 2.1e-10 68.9 85 38.8
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.8e-10 68.6 85 41.2
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 2.8e-10 68.6 83 43.4
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.7e-10 67.8 83 42.2
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.7e-10 67.8 85 45.9
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.7e-10 67.8 85 45.9
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 6.1e-10 67.4 66 50.0
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 6.1e-10 67.4 62 50.0
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 8.0e-10 67.0 85 44.7
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.0e-09 66.6 65 55.4
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.4e-09 66.2 83 43.4
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.4e-09 66.2 85 47.1
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.3e-09 65.5 85 43.5
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 5.2e-09 64.3 67 44.8
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.4e-08 61.6 82 45.1
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.7e-07 59.3 85 37.6
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 2.8e-07 58.5 80 43.8
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.3e-07 57.4 83 37.3


User provided reference genes

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