Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 9.4e-27 123.6 112 100.0
Glyma.16G166600 Glycine max HOM05D002879 ORTHO05D002930 8.2e-15 84.0 112 81.2
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 3.1e-14 82.0 108 53.7
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 4.1e-14 81.6 108 56.5
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 9.1e-14 80.5 94 74.5
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 2.0e-13 79.3 112 78.6
QL02p029925 Quercus lobata HOM05D002879 ORTHO05D002930 2.7e-13 79.0 63 87.3
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 4.5e-13 78.2 93 54.8
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 4.5e-13 78.2 91 67.0
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 1.0e-12 77.0 93 66.7
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 1.0e-12 77.0 90 81.1
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 5.0e-12 74.7 113 64.6
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 5.0e-12 74.7 89 49.4
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 8.5e-12 73.9 111 56.8
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 8.5e-12 73.9 91 69.2
Eucgr.F04219 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.5e-12 73.9 90 83.3
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 1.9e-11 72.8 90 60.0
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 2.5e-11 72.4 90 77.8
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 7.2e-11 70.9 85 64.7
Manes.18G093201 Manihot esculenta HOM05D002879 ORTHO05D002930 2.1e-10 69.3 95 80.0
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 3.6e-10 68.6 98 62.2
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 3.6e-10 68.6 98 62.2
Eucgr.D00723 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.7e-10 68.2 90 83.3
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 1.0e-09 67.0 91 47.3
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.8e-09 66.2 89 52.8
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 1.8e-09 66.2 89 44.9
Eucgr.E02070 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.0e-09 65.5 81 67.9
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 3.0e-09 65.5 110 52.7
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 4.0e-09 65.1 103 54.4
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 4.0e-09 65.1 74 73.0
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 5.2e-09 64.7 91 60.4
COL.COLO4_29859 Corchorus olitorius HOM05D002879 ORTHO05D002930 5.2e-09 64.7 90 71.1
Phvul.004G094600 Phaseolus vulgaris HOM05D002879 ORTHO05D002930 5.2e-09 64.7 112 77.7
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 5.2e-09 64.7 93 61.3
TAR381G1351 Trochodendron aralioides HOM05D002879 ORTHO05D002930 5.2e-09 64.7 115 66.1
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 5.2e-09 64.7 108 54.6
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 6.8e-09 64.3 116 65.5
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.8e-09 64.3 117 57.3
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 8.8e-09 63.9 90 75.6
Eucgr.F02697 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.8e-09 63.9 92 70.7
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 8.8e-09 63.9 110 58.2
arahy.Tifrunner.gnm1.ann1.HFKS8W Arachis hypogaea HOM05D002879 ORTHO05D002930 1.2e-08 63.5 89 76.4
Eucgr.E02069 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.2e-08 63.5 81 66.7
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.2e-08 63.5 81 65.4
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 1.5e-08 63.2 92 73.9
MELO3C025026.2 Cucumis melo HOM05D002879 ORTHO05D002930 1.5e-08 63.2 89 58.4
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 1.5e-08 63.2 61 80.3
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 1.5e-08 63.2 90 60.0
Ciclev10002749m.g Citrus clementina HOM05D002879 ORTHO05D002930 2.0e-08 62.8 91 73.6
QL02p038867 Quercus lobata HOM05D002879 ORTHO05D002930 2.0e-08 62.8 91 79.1
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 2.6e-08 62.4 108 48.1
Eucgr.E02065 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.4e-08 62.0 81 65.4
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.4e-08 61.6 110 40.9
arahy.Tifrunner.gnm1.ann1.MR10IA Arachis hypogaea HOM05D002879 ORTHO05D002930 4.4e-08 61.6 96 72.9
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 4.4e-08 61.6 87 59.8
Eucgr.E02064 Eucalyptus grandis HOM05D002879 ORTHO05D002930 7.5e-08 60.8 90 65.6
Hma1.2p1_0240F.1_g100350 Hydrangea macrophylla HOM05D002879 ORTHO05D002930 7.5e-08 60.8 63 69.8
PGR044G2207 Punica granatum HOM05D002879 ORTHO05D002930 7.5e-08 60.8 90 76.7
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 9.8e-08 60.5 97 57.7
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 9.8e-08 60.5 97 57.7
arahy.Tifrunner.gnm1.ann1.BF4CMP Arachis hypogaea HOM05D002879 ORTHO05D002930 1.3e-07 60.1 53 88.7
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 1.3e-07 60.1 95 57.9
Dinv25878 Davidia involucrata HOM05D002879 ORTHO05D002930 1.3e-07 60.1 91 71.4
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 1.7e-07 59.7 63 73.0
MD05G1028100 Malus domestica HOM05D002879 ORTHO05D002930 1.7e-07 59.7 52 84.6
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 2.8e-07 58.9 97 50.5
Ciclev10002747m.g Citrus clementina HOM05D002879 ORTHO05D002930 3.7e-07 58.5 91 60.4
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 3.7e-07 58.5 91 68.1
RcHm_v2.0_Chr6g0274981 Rosa chinensis HOM05D002879 ORTHO05D002930 3.7e-07 58.5 89 78.7
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 4.8e-07 58.2 91 57.1
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 4.8e-07 58.2 100 56.0
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 6.3e-07 57.8 89 57.3
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 6.3e-07 57.8 97 72.2
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 8.3e-07 57.4 91 61.5
Actinidia04757 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.1e-06 57.0 110 69.1
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.4e-06 56.6 52 75.0
FAN15G0525 Fragaria x ananassa HOM05D002879 ORTHO05D002930 1.4e-06 56.6 91 71.4
COL.COLO4_29858 Corchorus olitorius HOM05D002879 ORTHO05D002930 1.8e-06 56.2 96 72.9
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.8e-06 56.2 63 55.6
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 1.8e-06 56.2 96 53.1
MELO3C025025.2 Cucumis melo HOM05D035606 ORTHO05D002930 4.1e-06 55.1 96 68.8
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 5.4e-06 54.7 89 69.7
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 5.4e-06 54.7 89 69.7
Cc10_g14960 Coffea canephora HOM05D002879 ORTHO05D002930 9.1e-06 53.9 63 71.4
Glyma.20G167500 Glycine max HOM05D002879 ORTHO05D002930 9.1e-06 53.9 93 76.3
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 9.1e-06 53.9 59 52.5
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 9.1e-06 53.9 111 55.9
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 9.1e-06 53.9 97 54.6


User provided reference genes

Program Settings