Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 1.3e-69 267.3 270 100.0
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 5.6e-41 172.2 270 78.1
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 1.6e-40 170.6 270 69.6
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 3.0e-39 166.4 270 69.3
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 3.5e-35 152.9 267 67.4
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 5.9e-35 152.1 269 64.7
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 7.8e-35 151.8 268 66.8
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 7.3e-33 145.2 298 72.1
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 8.9e-31 138.3 269 64.7
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 3.5e-27 126.3 272 61.0
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 1.2e-24 117.9 270 60.4
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 1.6e-24 117.5 279 57.7
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 1.6e-24 117.5 279 57.7
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 2.1e-24 117.1 236 63.6
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 3.1e-23 113.2 279 58.1
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 4.0e-23 112.8 287 57.1
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 2.0e-22 110.5 272 59.6
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 3.4e-22 109.8 176 76.7
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 2.1e-19 100.5 261 59.0
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 4.6e-19 99.4 261 58.6
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 7.8e-19 98.6 256 63.3
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.7e-18 97.4 221 49.3
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 1.7e-18 97.4 257 57.2
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 2.3e-18 97.1 253 57.7
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 1.1e-17 94.7 270 55.2
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 1.5e-17 94.4 62 77.4
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 1.9e-17 94.0 56 82.1
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 1.9e-17 94.0 56 82.1
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 1.9e-17 94.0 56 82.1
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 2.5e-17 93.6 269 55.4
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 4.3e-17 92.8 54 85.2
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 9.5e-17 91.7 273 54.9
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 1.2e-16 91.3 55 81.8
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.6e-16 90.9 257 55.6
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 2.1e-16 90.5 55 81.8
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 2.1e-16 90.5 55 81.8
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 2.1e-16 90.5 50 88.0
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 2.1e-16 90.5 273 55.3
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 2.8e-16 90.1 50 88.0
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 3.6e-16 89.7 262 54.6
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 3.6e-16 89.7 265 56.6
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 8.1e-16 88.6 62 71.0
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.1e-15 88.2 262 56.9
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 1.1e-15 88.2 61 73.8
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 1.1e-15 88.2 254 56.7
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 1.4e-15 87.8 65 67.7
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 1.8e-15 87.4 52 80.8
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 1.8e-15 87.4 257 54.5
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 5.2e-15 85.9 53 77.4
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 5.2e-15 85.9 53 77.4
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 8.9e-15 85.1 270 54.4
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 1.2e-14 84.7 61 72.1
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.5e-14 84.3 53 75.5
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.5e-14 84.3 278 55.4
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.5e-14 84.3 50 80.0
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 2.6e-14 83.6 62 69.4
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 2.6e-14 83.6 265 55.8
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 3.4e-14 83.2 276 53.3
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 3.4e-14 83.2 54 79.6
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 3.4e-14 83.2 54 75.9
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 5.8e-14 82.4 63 61.9
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 7.6e-14 82.0 268 53.0
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 7.6e-14 82.0 258 53.1
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 9.9e-14 81.6 62 66.1
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 9.9e-14 81.6 65 66.2
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 1.3e-13 81.3 260 53.8
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 1.3e-13 81.3 51 72.5
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 1.3e-13 81.3 262 54.2
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.3e-13 81.3 53 73.6
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.3e-13 81.3 263 54.8
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 1.7e-13 80.9 267 53.9
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 2.2e-13 80.5 55 69.1
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 2.2e-13 80.5 54 68.5
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 2.2e-13 80.5 62 62.9
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 2.9e-13 80.1 277 52.0
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 2.9e-13 80.1 272 54.4
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 2.9e-13 80.1 63 65.1
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 3.7e-13 79.7 62 64.5
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 6.4e-13 79.0 52 69.2
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 1.1e-12 78.2 273 54.2
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 3.2e-12 76.6 266 53.0
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 4.1e-12 76.3 267 52.8
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 5.4e-12 75.9 47 76.6
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 5.4e-12 75.9 71 60.6
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 9.2e-12 75.1 259 60.6
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 9.2e-12 75.1 62 61.3
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 9.2e-12 75.1 277 52.0
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.2e-11 74.7 49 73.5
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 1.6e-11 74.3 57 61.4
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 7.8e-11 72.0 62 61.3
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 7.8e-11 72.0 273 53.5
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 1.0e-10 71.6 266 60.2
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 1.0e-10 71.6 47 74.5
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 3.9e-10 69.7 47 70.2
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 5.1e-10 69.3 273 53.8
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.9e-09 67.4 301 48.5
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 3.3e-09 66.6 268 52.2
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.6e-09 65.9 256 53.9
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 7.3e-09 65.5 268 52.2
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 1.2e-08 64.7 54 64.8
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 4.7e-08 62.8 298 51.7
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 6.2e-08 62.4 50 64.0
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 1.1e-07 61.6 54 63.0
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 1.4e-07 61.2 47 61.7
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 1.4e-07 61.2 269 57.6
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 4.0e-07 59.7 47 55.3
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 4.0e-07 59.7 58 53.4
QL08p050705 Quercus lobata HOM05D006475 ORTHO05D007969 6.8e-07 58.9 54 68.5


User provided reference genes

Program Settings