Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 0.0e+00 1158.3 574 100.0
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 0.0e+00 1080.1 574 93.9
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 5.5e-248 860.9 582 76.8
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.8e-238 829.3 582 74.6
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 4.8e-236 821.2 582 73.9
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 9.1e-235 817.0 577 72.8
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 5.4e-227 791.2 583 71.4
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.6e-223 779.6 584 70.5
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.4e-222 776.5 597 69.3
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 6.4e-220 767.7 585 70.1
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.0e-214 748.4 592 66.9
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 7.5e-213 744.2 598 66.4
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.0e-197 693.0 587 63.4
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 5.4e-195 684.9 614 61.9
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.4e-195 684.9 614 61.9
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.8e-191 672.5 583 60.9
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 6.2e-183 644.8 605 57.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 7.6e-181 637.9 581 58.2
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.2e-180 636.3 589 57.7
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.4e-174 616.3 586 57.3
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 6.9e-174 614.8 590 56.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 9.3e-171 604.4 581 55.4
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.2e-170 604.0 594 54.0
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.1e-170 603.2 582 56.5
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.7e-170 602.8 610 55.7
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.5e-170 602.4 596 54.5
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.9e-170 601.3 598 53.8
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.3e-167 594.0 662 50.6
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 8.1e-167 591.3 605 52.2
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 3.8e-164 582.4 594 54.5
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 2.5e-163 579.7 613 54.2
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 4.2e-163 578.9 614 52.4
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.7e-161 571.6 617 52.8
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.1e-160 570.9 606 53.5
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.8e-159 566.2 603 53.7
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 9.0e-158 561.2 585 53.3
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.5e-157 560.5 586 52.7
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 3.0e-153 546.2 586 51.9
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.1e-152 544.3 593 50.8
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.3e-152 542.7 637 51.0
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.8e-151 539.7 443 64.8
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.4e-150 536.6 574 51.0
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.9e-148 529.6 599 48.9
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.1e-147 527.7 511 55.6
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.5e-147 526.6 601 50.1
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.2e-146 524.2 643 47.0
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.4e-145 520.8 620 49.2
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.8e-145 520.4 563 52.0
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 3.0e-145 519.6 636 48.0
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.9e-145 519.2 586 48.8
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.1e-145 518.8 587 48.4
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.0e-144 516.9 577 49.4
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.7e-144 515.4 575 49.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 7.4e-144 515.0 575 48.7
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 7.4e-144 515.0 581 49.1
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.8e-143 513.1 590 47.1
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 2.8e-143 513.1 585 47.7
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 3.7e-143 512.7 585 47.5
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 6.3e-143 511.9 643 47.1
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 8.2e-143 511.5 604 48.5
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 8.2e-143 511.5 577 48.2
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.8e-142 510.4 582 47.6
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 9.1e-142 508.1 583 47.7
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.0e-141 506.9 592 47.0
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.7e-140 503.8 590 48.0
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.7e-140 503.8 580 47.8
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 5.0e-140 502.3 513 54.2
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 5.5e-139 498.8 582 47.1
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 9.4e-139 498.0 606 48.0
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 6.1e-138 495.4 578 47.4
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.8e-137 493.8 492 53.0
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 1.8e-137 493.8 627 47.2
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 5.2e-137 492.3 620 46.9
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 2.0e-136 490.3 627 45.9
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.4e-136 489.2 578 46.2
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 5.7e-136 488.8 595 46.4
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 7.4e-136 488.4 590 45.9
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.3e-135 487.6 662 44.4
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.8e-135 485.7 467 54.4
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-134 484.2 588 46.4
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.2e-133 481.1 665 43.3
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.6e-133 480.7 590 45.3
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.5e-131 474.2 592 45.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 4.7e-130 469.2 513 50.5
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 6.1e-130 468.8 485 52.6
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 8.0e-130 468.4 658 45.4
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.7e-127 460.7 579 44.2
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.8e-127 459.9 586 44.7
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.8e-126 457.2 585 43.9
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 9.1e-126 454.9 637 43.3
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.6e-125 454.1 639 43.2
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 2.2e-124 450.3 305 76.7
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.9e-123 447.2 454 52.9
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.8e-114 416.8 590 40.8
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.2e-113 412.5 560 45.4
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 6.8e-113 412.1 621 42.7
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 2.0e-112 410.6 523 46.5
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 4.9e-111 406.0 584 43.7
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 2.3e-105 387.1 329 61.4
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.0e-105 386.3 605 39.3
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 6.8e-105 385.6 588 40.5
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.7e-103 380.9 509 43.6
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-101 373.6 406 48.5
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.3e-99 366.3 352 56.5
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 4.0e-97 359.8 585 38.6
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 8.9e-97 358.6 603 37.1
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.1e-90 337.4 509 42.2
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 2.8e-90 337.0 361 53.2
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.5e-88 331.3 676 34.5
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.7e-87 327.8 533 37.9
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.1e-86 325.1 491 42.4
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 5.4e-86 322.8 467 39.6
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.2e-85 321.6 372 48.7
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 4.6e-85 319.7 250 67.2
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 5.1e-84 316.2 322 57.5
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 5.6e-83 312.8 446 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 6.0e-77 292.7 494 36.4
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.0e-72 277.7 370 44.3
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 6.0e-69 266.2 265 49.4
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.9e-68 263.5 250 56.0
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.3e-66 258.5 278 54.3
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 3.6e-66 256.9 313 47.0
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 5.3e-65 253.1 326 44.2
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 2.2e-63 247.7 279 47.7
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 1.1e-62 245.4 282 51.4
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.6e-58 231.5 246 50.0
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 2.2e-55 221.1 182 65.9
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.9e-54 218.0 254 48.4
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.2e-53 215.3 250 50.4
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.7e-53 214.2 225 52.0
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 6.0e-53 213.0 132 72.0
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.1e-51 208.8 158 63.9
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 3.9e-44 183.7 208 52.9
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.3e-43 180.3 363 34.2
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 7.4e-43 179.5 241 44.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 3.7e-42 177.2 379 37.7
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.4e-41 174.5 257 44.7
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.2e-40 172.2 244 42.6
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 7.2e-38 162.9 166 51.8
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.2e-37 162.2 155 53.5
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.1e-37 161.4 184 48.4
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-36 157.9 184 47.8
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 2.3e-36 157.9 184 50.0
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.8e-36 156.0 184 47.3
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-35 154.1 184 47.3
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-35 154.1 184 47.3
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-35 154.1 184 47.3
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 2.0e-32 144.8 97 79.4
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 3.4e-32 144.1 115 65.2
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.5e-32 143.7 103 69.9
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-30 138.3 100 68.0
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.9e-30 138.3 138 51.4
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 2.3e-28 131.3 637 22.1
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 8.8e-28 129.4 226 38.1
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.4e-27 126.3 242 34.3
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.1e-25 122.5 126 54.0
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.4e-25 121.3 126 52.4
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.1e-25 120.6 188 39.4
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 9.1e-25 119.4 109 54.1
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.3e-23 115.5 171 39.2
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.0e-20 104.4 81 64.2
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 2.4e-17 94.7 79 62.0
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 7.0e-17 93.2 144 38.2
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.2e-14 84.0 69 53.6
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.0e-12 77.8 182 34.6
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.5e-11 75.5 105 49.5
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 1.1e-09 69.3 110 44.5
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.4e-09 68.2 191 30.9
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 4.1e-09 67.4 45 64.4
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.5e-08 63.9 45 62.2
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.2e-06 57.4 153 33.3
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 7.2e-06 56.6 131 32.8
arahy.Tifrunner.gnm1.ann1.X7RZ6W Arachis hypogaea HOM05D001609 ORTHO05D001469 9.4e-06 56.2 96 39.6


User provided reference genes

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