Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 4.0e-131 471.9 320 100.0
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 4.1e-91 339.0 320 63.1
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 1.3e-84 317.4 320 59.4
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 6.3e-84 315.1 302 61.9
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 2.6e-69 266.5 278 59.0
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 1.0e-65 254.6 317 49.8
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 6.5e-65 251.9 319 48.9
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 4.7e-63 245.7 310 48.7
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 3.0e-62 243.0 332 48.5
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 2.0e-61 240.4 312 50.6
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 5.7e-61 238.8 329 50.8
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 5.7e-61 238.8 359 45.4
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 1.7e-60 237.3 311 46.6
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 8.3e-60 235.0 319 51.1
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 3.5e-58 229.6 311 45.3
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 6.5e-57 225.3 316 45.6
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 1.2e-55 221.1 314 47.5
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 8.0e-55 218.4 303 55.1
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 1.8e-54 217.2 301 48.8
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 2.0e-53 213.8 289 46.4
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 9.8e-53 211.5 320 62.2
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 2.2e-52 210.3 327 42.2
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 2.4e-51 206.8 293 45.4
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 1.7e-49 200.7 352 43.5
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 2.3e-49 200.3 294 45.9
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 2.3e-49 200.3 315 42.2
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 2.5e-48 196.8 294 46.6
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 2.5e-48 196.8 348 43.4
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 1.6e-47 194.1 312 40.4
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 3.0e-46 189.9 374 38.0
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 4.0e-46 189.5 344 39.8
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 2.0e-45 187.2 317 40.4
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 3.4e-45 186.4 291 43.0
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 7.5e-45 185.3 288 41.7
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 1.3e-44 184.5 323 40.2
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 3.7e-44 183.0 339 50.7
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 4.9e-44 182.6 323 39.6
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.4e-43 181.0 317 38.5
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 2.4e-43 180.3 317 42.3
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 9.2e-43 178.3 325 39.1
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.6e-42 177.6 277 42.2
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 7.8e-42 175.3 334 40.1
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 1.0e-41 174.9 329 41.3
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.3e-41 174.5 325 38.2
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 3.0e-41 173.3 330 39.7
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 3.6e-39 166.4 354 36.2
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 3.1e-38 163.3 329 38.9
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 9.8e-37 158.3 167 59.3
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.1e-35 154.8 231 43.7
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 5.4e-35 152.5 241 41.5
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 2.7e-34 150.2 335 36.1
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 3.5e-34 149.8 305 42.6
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 8.6e-33 145.2 199 43.7
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 1.5e-32 144.4 237 41.4
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 2.8e-31 140.2 320 34.1
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 1.8e-30 137.5 309 34.6
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 9.9e-29 131.7 314 36.0
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 2.9e-28 130.2 111 67.6
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 4.9e-28 129.4 278 34.9
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 3.2e-27 126.7 308 33.4
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 7.1e-27 125.6 235 38.3
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 8.6e-25 118.6 169 37.9
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 3.3e-24 116.7 310 32.6
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 1.6e-23 114.4 174 34.5
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 8.9e-22 108.6 291 33.3
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 2.0e-21 107.5 167 43.7
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 1.4e-19 101.3 169 42.6
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 1.2e-18 98.2 218 35.3
RcHm_v2.0_Chr4g0445121 Rosa chinensis HOM05D007593 ORTHO05D009686 2.3e-17 94.0 79 58.2
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 3.9e-17 93.2 188 33.0
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 1.9e-16 90.9 188 35.6
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 3.3e-16 90.1 155 42.6
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 1.2e-13 81.6 138 36.2
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 1.5e-13 81.3 168 35.7
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 6.4e-12 75.9 274 49.6
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 7.1e-11 72.4 64 67.2
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 2.7e-10 70.5 70 61.4
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 7.8e-10 68.9 72 62.5
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 1.0e-09 68.6 70 61.4
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 1.3e-09 68.2 287 31.7
Ciclev10033560m.g Citrus clementina HOM05D007593 ORTHO05D009686 3.9e-09 66.6 93 41.9
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 8.7e-09 65.5 285 24.6
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 9.6e-08 62.0 315 26.0
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 3.6e-07 60.1 130 32.3


User provided reference genes

Program Settings