Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003712 Lotus japonicus HOM05D006123 ORTHO05D007578 2.5e-105 385.6 211 100.0
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 3.6e-72 275.4 206 79.6
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 3.0e-58 229.2 207 66.7
Phvul.006G013100 Phaseolus vulgaris HOM05D006123 ORTHO05D007578 5.6e-57 224.9 207 64.3
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 7.4e-57 224.6 212 64.6
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 7.4e-57 224.6 212 64.6
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 7.4e-57 224.6 212 64.6
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 2.8e-56 222.6 207 64.3
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 3.1e-55 219.2 207 62.8
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 5.3e-55 218.4 207 63.3
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 9.0e-55 217.6 207 62.3
Ca_16273_v3 Cicer arietinum L. HOM05D006123 ORTHO05D007578 1.2e-54 217.2 207 63.8
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 4.3e-49 198.7 204 57.4
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 7.4e-49 198.0 232 55.2
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 9.6e-49 197.6 206 56.3
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 2.1e-48 196.4 205 57.1
GSVIVG01001139001 Vitis vinifera HOM05D006123 ORTHO05D007578 1.8e-47 193.4 205 57.1
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 4.1e-47 192.2 205 56.1
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 2.0e-46 189.9 206 55.8
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 2.6e-46 189.5 220 52.7
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 3.4e-46 189.1 205 54.6
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 3.4e-46 189.1 206 56.3
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 3.4e-46 189.1 206 56.3
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 3.4e-46 189.1 206 56.3
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 7.6e-46 188.0 206 56.3
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 7.6e-46 188.0 206 56.8
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 7.6e-46 188.0 206 56.3
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 1.0e-45 187.6 206 55.3
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 1.0e-45 187.6 206 55.8
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 1.3e-45 187.2 206 55.3
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 1.7e-45 186.8 224 52.2
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 1.7e-45 186.8 206 55.3
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 2.9e-45 186.0 205 53.7
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 5.0e-45 185.3 206 54.9
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 8.4e-45 184.5 208 53.8
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 1.1e-44 184.1 206 56.3
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 1.9e-44 183.3 220 51.4
Sabra03G0115100 Salix brachista HOM05D006123 ORTHO05D007578 1.9e-44 183.3 224 54.9
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 2.5e-44 183.0 220 51.4
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 2.5e-44 183.0 220 50.9
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 2.5e-44 183.0 220 50.9
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 2.5e-44 183.0 205 52.7
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 3.2e-44 182.6 220 50.9
SGA_v2.0_scaffold258G45757 Striga asiatica HOM05D006123 ORTHO05D007578 9.3e-44 181.0 203 54.7
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 1.2e-43 180.6 206 54.4
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 1.2e-43 180.6 224 52.7
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 1.2e-43 180.6 205 55.1
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 1.6e-43 180.3 238 49.2
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 2.1e-43 179.9 229 48.9
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 2.7e-43 179.5 233 49.4
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 3.5e-43 179.1 205 54.1
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 4.6e-43 178.7 212 51.9
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 4.6e-43 178.7 205 52.2
Lj3C1079T4 Lonicera japonica HOM05D006123 ORTHO05D007578 6.1e-43 178.3 225 51.1
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 1.8e-42 176.8 204 53.4
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 1.8e-42 176.8 208 51.4
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 2.3e-42 176.4 208 51.9
DCAR_023486 Daucus carota HOM05D006123 ORTHO05D007578 2.3e-42 176.4 208 52.4
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 2.3e-42 176.4 205 54.1
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 3.0e-42 176.0 208 51.4
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 3.9e-42 175.6 204 52.5
FAN12G4288 Fragaria x ananassa HOM05D006123 ORTHO05D007578 5.1e-42 175.3 204 52.5
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 1.5e-41 173.7 206 51.9
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 1.5e-41 173.7 205 52.2
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 1.5e-41 173.7 212 50.9
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 1.5e-41 173.7 206 51.9
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 2.5e-41 172.9 206 51.0
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 2.5e-41 172.9 204 52.0
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 4.3e-41 172.2 238 48.3
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 4.3e-41 172.2 232 48.3
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 9.7e-41 171.0 229 47.2
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 9.7e-41 171.0 204 51.0
PGSC0003DMG400032561 Solanum tuberosum HOM05D006123 ORTHO05D007578 1.6e-40 170.2 221 47.5
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 2.2e-40 169.9 247 47.0
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 2.8e-40 169.5 205 52.7
Sopen04g004440 Solanum pennellii HOM05D006123 ORTHO05D007578 6.3e-40 168.3 221 47.1
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 8.2e-40 167.9 208 51.9
PGSC0003DMG400013211 Solanum tuberosum HOM05D006123 ORTHO05D007578 1.4e-39 167.2 221 46.6
Solyc04g009320.3 Solanum lycopersicum HOM05D006123 ORTHO05D007578 1.8e-39 166.8 221 46.6
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 3.1e-39 166.0 205 51.2
Os09g0512700 Oryza sativa ssp. japonica HOM05D006123 ORTHO05D007578 4.1e-39 165.6 204 50.0
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 9.0e-39 164.5 223 49.3
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 9.0e-39 164.5 206 52.9
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 1.2e-38 164.1 207 50.2
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 3.4e-38 162.5 212 50.5
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 4.5e-38 162.2 205 48.8
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 5.9e-38 161.8 236 46.6
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 2.2e-37 159.8 237 46.4
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 2.5e-36 156.4 205 48.3
CSS0017548 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 9.4e-36 154.5 197 51.8
MBI11_g04258_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 9.4e-36 154.5 180 52.2
CAN.G624.16 Capsicum annuum HOM05D006123 ORTHO05D007578 1.6e-35 153.7 221 44.3
AUR62018638 Chenopodium quinoa HOM05D006123 ORTHO05D007578 1.6e-35 153.7 173 53.2
Thhalv10010449m.g Eutrema salsugineum HOM05D006123 ORTHO05D007578 2.1e-35 153.3 192 50.0
unitig_749.g13336 Utricularia gibba HOM05D006123 ORTHO05D007578 3.6e-35 152.5 238 45.8
Mapoly0124s0025 Marchantia polymorpha HOM05D006123 ORTHO05D007578 2.0e-33 146.7 206 46.6
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 2.5e-33 146.4 205 45.4
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 7.4e-33 144.8 258 39.1
Zm00001eb097710 Zea mays HOM05D006123 ORTHO05D007578 2.2e-32 143.3 202 49.5
Potri.003G158701 Populus trichocarpa HOM05D006123 ORTHO05D007578 1.4e-31 140.6 180 52.2
Pp3c20_2600 Physcomitrium patens HOM05D006123 ORTHO05D007578 1.5e-30 137.1 201 44.3
SMO367G0194 Selaginella moellendorffii HOM05D006123 ORTHO05D007578 2.6e-30 136.3 205 42.9
CBR_g16829 Chara braunii HOM05D006123 ORTHO05D007578 3.6e-27 125.9 201 40.3
Peaxi162Scf00760g00014 Petunia axillaris HOM05D006123 ORTHO05D007578 3.6e-27 125.9 172 45.9
vmacro15977 Vaccinium macrocarpon HOM05D006123 ORTHO05D007578 3.3e-25 119.4 334 32.0
Rhsim12G0090900 Rhododendron simsii HOM05D006123 ORTHO05D007578 4.1e-23 112.5 100 60.0
Lsat_1_v5_gn_6_11200 Lactuca sativa HOM05D001489 ORTHO05D007578 7.0e-23 111.7 178 44.4
Glyma.20G054300 Glycine max HOM05D006123 ORTHO05D007578 1.2e-22 110.9 81 76.5
Nitab4.5_0007261g0070 Nicotiana tabacum HOM05D006123 ORTHO05D007578 1.5e-22 110.5 109 55.0
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 1.1e-20 104.4 170 42.4
Glyma.20G054400 Glycine max HOM05D006123 ORTHO05D007578 1.9e-20 103.6 71 80.3
Migut.H01174 Erythranthe guttata HOM05D006123 ORTHO05D007578 1.6e-14 84.0 112 50.0
AUR62039304 Chenopodium quinoa HOM05D006123 ORTHO05D007578 5.9e-14 82.0 86 57.0
SHI10577 Sapria himalayana HOM05D006123 ORTHO05D007578 5.0e-13 79.0 90 50.0
SHI51501 Sapria himalayana HOM05D006123 ORTHO05D007578 1.5e-12 77.4 90 48.9
AagrBONN_evm.TU.Sc2ySwM_344.168 Anthoceros agrestis HOM05D006123 ORTHO05D007578 1.4e-07 60.8 213 27.2
Cre07.g323500 Chlamydomonas reinhardtii HOM05D006123 ORTHO05D007578 3.1e-07 59.7 210 28.1


User provided reference genes

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