Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 4.4e-206 721.1 372 100.0
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 8.1e-176 620.5 373 86.1
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.8e-175 619.4 362 87.8
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 9.9e-174 613.6 362 87.6
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 3.8e-173 611.7 376 86.7
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 7.1e-172 607.4 406 79.3
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 9.3e-172 607.1 373 83.6
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.8e-170 602.8 363 86.8
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 8.2e-160 567.4 335 87.5
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 5.0e-157 558.1 335 83.9
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.1e-156 557.0 338 82.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 3.2e-156 555.4 354 80.2
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 9.3e-156 553.9 351 81.2
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.6e-155 551.6 353 79.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.0e-154 550.4 372 76.3
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.3e-154 549.3 336 81.8
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 5.1e-154 548.1 350 79.4
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.1e-153 547.0 335 83.9
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.9e-153 546.2 353 78.8
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 7.4e-153 544.3 338 81.4
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 9.7e-153 543.9 337 82.5
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.1e-151 540.4 335 81.8
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.4e-151 540.0 336 80.7
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 2.4e-151 539.3 348 80.2
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 5.3e-151 538.1 338 80.8
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 5.3e-151 538.1 331 81.9
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 9.0e-151 537.3 338 81.7
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.2e-150 537.0 338 80.8
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 1.2e-150 537.0 339 78.5
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 4.5e-150 535.0 335 81.2
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 5.9e-150 534.6 339 78.8
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 7.7e-150 534.3 338 80.2
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.0e-149 533.9 329 82.1
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.0e-149 533.9 330 80.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.7e-149 533.1 349 79.1
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.2e-149 532.7 348 79.6
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 3.8e-149 531.9 328 82.6
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 6.5e-149 531.2 337 80.4
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 6.5e-149 531.2 313 84.7
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 8.5e-149 530.8 348 78.7
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 8.5e-149 530.8 335 80.9
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.4e-148 530.0 335 81.2
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.5e-148 529.3 350 77.7
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 4.2e-148 528.5 338 79.6
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 4.2e-148 528.5 342 79.2
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.5e-148 528.1 346 77.2
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 7.2e-148 527.7 335 80.0
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 3.6e-147 525.4 338 79.9
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.6e-147 525.4 335 79.7
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.6e-147 525.0 335 80.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 6.1e-147 524.6 336 78.9
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 7.9e-147 524.2 335 79.1
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 3.0e-146 522.3 335 78.8
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 3.9e-146 521.9 339 78.8
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.1e-146 521.5 352 77.0
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 5.1e-146 521.5 399 69.4
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 6.7e-146 521.2 339 78.5
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 6.7e-146 521.2 339 78.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 8.8e-146 520.8 355 76.6
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.8e-146 520.8 346 76.3
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 8.8e-146 520.8 348 76.7
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.1e-145 520.4 339 78.5
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.6e-145 519.2 338 78.4
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 2.6e-145 519.2 317 82.3
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 9.7e-145 517.3 365 74.0
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.7e-144 516.5 364 72.8
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.2e-144 516.2 355 74.1
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 2.2e-144 516.2 355 74.4
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 4.8e-144 515.0 335 79.7
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 6.3e-144 514.6 317 81.4
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.8e-143 513.1 335 79.1
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 7.7e-142 507.7 311 81.7
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 3.8e-141 505.4 313 81.8
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 1.6e-139 500.0 302 83.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 4.7e-139 498.4 311 80.4
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.3e-137 492.3 311 79.1
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 2.2e-136 489.6 366 73.2
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 2.4e-135 486.1 338 74.9
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 5.3e-135 485.0 305 81.0
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 9.1e-135 484.2 375 71.7
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 9.1e-135 484.2 302 81.5
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 9.1e-135 484.2 313 76.0
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.6e-134 483.4 353 72.0
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.6e-134 483.4 335 72.8
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.6e-134 482.6 366 67.5
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 5.5e-132 474.9 335 74.3
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.4e-130 470.3 345 73.3
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.5e-129 466.8 287 82.9
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.6e-129 466.1 289 82.4
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 3.7e-128 462.2 307 76.9
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 2.4e-127 459.5 296 79.7
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.2e-126 457.2 393 63.1
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.6e-126 456.8 285 80.0
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 4.5e-126 455.3 315 72.1
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 3.8e-125 452.2 330 71.5
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.1e-123 446.4 281 79.7
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 7.5e-121 438.0 346 68.2
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 5.9e-118 428.3 329 69.9
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 2.1e-115 419.9 314 68.2
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.0e-110 403.3 298 66.8
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.9e-108 396.7 242 83.5
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.5e-108 396.4 369 59.9
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.6e-108 395.2 217 89.9
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 8.3e-104 381.3 255 74.5
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.0e-97 360.1 221 82.8
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 3.4e-89 332.8 305 57.7
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.1e-82 311.2 307 54.4
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 5.2e-82 308.9 230 67.4
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 3.4e-81 306.2 308 55.8
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.4e-79 300.8 192 79.2
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.9e-79 300.4 187 80.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 5.2e-74 282.3 220 65.9
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.3e-72 277.7 212 66.0
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 5.1e-69 265.8 167 82.0
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 5.8e-65 252.3 335 46.9
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.3e-61 240.4 285 51.2
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.6e-59 234.2 151 77.5
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.2e-54 218.0 160 70.6
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 4.8e-51 206.1 155 69.0
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 3.0e-45 186.8 242 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.1e-42 178.3 170 55.3
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.0e-37 161.8 112 67.0
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.0e-37 161.8 112 74.1
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.3e-37 161.4 265 41.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.9e-37 159.8 280 35.0
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.1e-36 158.3 110 69.1
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 1.5e-33 147.9 263 37.6
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 5.0e-32 142.9 243 42.8
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.2e-31 140.2 101 77.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.4e-31 138.7 88 76.1
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 3.7e-27 126.7 81 81.5
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.6e-20 104.0 108 56.5
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.8e-19 99.8 113 51.3
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.3e-18 96.3 60 81.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.2e-17 95.1 88 61.4
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.2e-16 90.9 59 79.7
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 8.5e-16 89.0 53 73.6
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.5e-15 87.4 62 66.1
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 2.7e-14 84.0 55 72.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.3e-10 69.7 41 78.0
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.0e-09 67.8 77 48.1
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 3.6e-06 57.0 34 76.5


User provided reference genes

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