Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 4.4e-203 711.1 360 100.0
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 2.2e-170 602.4 360 83.9
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 4.6e-168 594.7 361 83.1
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.3e-167 593.2 365 83.8
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 8.2e-165 583.9 363 82.1
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.2e-163 580.1 360 83.9
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 2.3e-159 565.8 332 84.6
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.6e-155 552.4 361 78.4
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 3.9e-151 538.5 360 75.6
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 3.3e-150 535.4 334 79.3
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.4e-148 530.0 358 74.0
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 9.1e-148 527.3 358 73.7
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.2e-147 526.9 358 75.1
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.5e-147 526.6 358 75.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.6e-147 525.8 360 74.4
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 3.4e-147 525.4 329 79.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 7.7e-147 524.2 332 78.9
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 2.2e-146 522.7 360 73.1
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 5.0e-146 521.5 335 76.7
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 6.5e-146 521.2 332 78.6
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 9.4e-145 517.3 333 78.1
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 4.7e-144 515.0 358 73.7
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 6.1e-144 514.6 331 77.9
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.8e-143 513.1 360 73.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.3e-143 512.7 360 71.4
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 5.1e-143 511.5 345 78.6
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 5.1e-143 511.5 362 72.4
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.1e-142 510.4 334 75.1
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.0e-142 509.6 330 76.7
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 2.6e-142 509.2 358 74.0
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 5.7e-142 508.1 362 71.8
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 5.7e-142 508.1 362 71.8
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 9.7e-142 507.3 362 71.5
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.3e-141 506.9 357 71.4
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 2.2e-141 506.1 362 71.3
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 4.8e-141 505.0 362 71.8
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 8.2e-141 504.2 361 70.1
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 8.2e-141 504.2 358 75.4
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.8e-140 503.1 362 71.5
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.1e-140 501.9 362 70.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 7.0e-140 501.1 358 72.6
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.5e-139 500.0 361 69.8
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 4.5e-139 498.4 361 69.5
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 5.9e-139 498.0 381 69.3
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 2.9e-138 495.7 361 69.5
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.8e-138 495.4 361 71.2
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.1e-137 493.8 361 68.4
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.5e-137 493.4 332 75.6
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 3.2e-137 492.3 360 69.7
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 4.2e-137 491.9 362 69.6
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.2e-137 491.9 358 70.4
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 7.2e-137 491.1 361 70.1
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 9.4e-137 490.7 361 68.4
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.2e-136 490.3 358 71.2
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.6e-136 490.0 361 69.5
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.1e-136 489.6 358 70.9
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.7e-136 489.2 366 67.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.7e-136 489.2 361 69.5
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.3e-135 486.1 362 69.3
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 3.9e-135 485.3 380 65.8
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 8.8e-135 484.2 365 66.8
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.5e-134 483.4 358 69.3
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 5.7e-134 481.5 361 67.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 1.3e-133 480.3 362 67.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.2e-133 477.6 349 69.9
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 8.2e-133 477.6 361 67.9
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.0e-131 473.0 364 66.5
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 7.7e-131 471.1 363 65.6
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.3e-130 470.3 361 67.9
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 2.9e-130 469.2 414 61.1
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.6e-128 462.2 282 80.9
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.4e-127 460.3 435 59.8
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.4e-127 460.3 363 68.3
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.8e-127 459.9 364 64.6
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 2.6e-126 456.1 359 66.9
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 8.3e-125 451.1 361 66.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 5.4e-124 448.4 356 62.4
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.5e-123 445.3 330 68.8
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.7e-120 436.0 304 73.7
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.7e-120 435.3 350 64.0
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.0e-119 434.1 354 61.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 2.8e-117 426.0 316 66.8
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 3.1e-116 422.5 263 83.3
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.3e-114 416.4 264 76.5
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.2e-112 410.6 337 62.0
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.2e-110 404.1 300 66.7
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.2e-109 399.8 358 61.5
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 8.3e-109 397.9 264 76.5
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.9e-106 389.4 321 63.6
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 2.5e-105 386.3 263 76.0
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.4e-103 380.6 333 58.6
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.8e-103 380.2 329 58.1
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 6.8e-103 378.3 235 80.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.0e-102 376.7 263 74.5
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 4.4e-102 375.6 271 71.2
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 5.8e-102 375.2 339 56.6
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 6.0e-99 365.2 264 71.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 7.8e-99 364.8 232 78.4
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 5.2e-95 352.1 263 68.8
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.4e-93 345.1 290 60.0
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 9.2e-92 341.3 259 68.3
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.7e-88 328.9 389 48.3
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.7e-85 320.5 205 79.0
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 8.6e-82 308.1 311 52.7
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.1e-79 301.2 188 80.9
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 6.8e-79 298.5 345 47.5
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 3.5e-67 259.6 341 44.6
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.6e-62 243.4 208 60.1
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 4.3e-57 226.1 451 35.3
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.7e-53 214.2 219 53.9
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.9e-49 200.7 385 35.8
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.5e-49 200.3 218 50.0
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.5e-43 179.9 145 65.5
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 6.9e-39 165.6 306 33.7
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.0e-38 164.1 150 58.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.0e-38 164.1 115 73.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.9e-34 149.8 143 52.4
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.4e-31 140.6 135 57.0
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.2e-28 129.8 116 55.2
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.6e-27 126.7 96 63.5
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 7.4e-25 119.0 106 64.2
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.7e-24 117.9 75 72.0
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.4e-23 114.0 227 32.2
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.4e-23 114.0 73 71.2
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 2.6e-22 110.5 81 65.4
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.7e-21 107.8 77 71.4
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 9.7e-17 92.0 91 54.9
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 9.8e-09 65.5 111 34.2
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 3.1e-07 60.5 202 26.7
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 5.4e-07 59.7 182 24.2
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 1.2e-06 58.5 163 28.8
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 1.2e-06 58.5 146 27.4
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 1.2e-06 58.5 155 29.0
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 1.6e-06 58.2 29 89.7
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 1.6e-06 58.2 179 26.8
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 2.0e-06 57.8 146 24.0
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 3.5e-06 57.0 172 25.6
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.5e-06 57.0 163 27.6
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 4.5e-06 56.6 162 24.7
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 4.5e-06 56.6 127 29.1
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 4.5e-06 56.6 174 27.6
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 5.9e-06 56.2 101 33.7
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 5.9e-06 56.2 123 28.5
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 7.7e-06 55.8 163 27.6
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 7.7e-06 55.8 162 24.7
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 7.7e-06 55.8 107 31.8
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 7.7e-06 55.8 146 28.8


User provided reference genes

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