Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.1e-295 1019.2 516 100.0
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 3.1e-258 894.8 516 85.9
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.3e-256 889.4 516 86.2
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.7e-256 889.0 516 85.1
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.5e-255 884.0 513 86.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.7e-254 881.7 514 85.4
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 6.7e-253 877.1 519 85.5
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 4.3e-252 874.4 513 85.6
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 7.4e-252 873.6 514 86.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.3e-248 862.8 516 84.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.3e-248 862.8 516 84.3
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.0e-245 853.2 516 83.1
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.8e-245 852.4 516 83.1
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 2.6e-241 838.6 516 82.2
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 4.5e-225 784.6 509 74.9
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.7e-225 783.9 509 74.9
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.3e-224 783.1 507 75.5
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.5e-224 780.8 509 74.9
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 8.0e-222 773.9 507 75.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.0e-221 773.5 482 78.4
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 3.0e-221 771.9 506 74.7
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 8.8e-221 770.4 509 73.9
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 9.7e-220 766.9 491 75.2
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.7e-219 766.1 510 72.9
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.8e-219 765.4 508 74.0
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 3.7e-219 765.0 510 73.1
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 6.3e-219 764.2 493 75.1
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 6.3e-219 764.2 507 74.0
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 4.1e-218 761.5 481 75.9
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 5.3e-218 761.1 492 76.4
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.6e-217 759.6 507 72.2
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.7e-217 758.8 482 75.7
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 3.5e-217 758.4 508 72.8
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.5e-217 758.4 508 73.4
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 7.7e-217 757.3 504 72.8
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.8e-216 755.0 507 72.8
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 6.5e-216 754.2 483 75.2
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.5e-215 753.1 504 72.8
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.8e-213 746.1 511 70.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 4.0e-213 745.0 482 74.3
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.3e-211 740.0 512 70.9
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 9.1e-210 733.8 494 73.5
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 3.5e-209 731.9 507 70.4
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 4.5e-209 731.5 479 73.9
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 4.5e-209 731.5 479 72.4
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.0e-208 730.3 481 73.0
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.0e-208 730.3 488 71.9
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.3e-208 729.9 480 72.1
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 3.8e-208 728.4 509 70.7
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.1e-207 726.9 483 71.6
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.1e-207 726.9 483 71.4
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 4.2e-207 724.9 477 74.0
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 5.5e-207 724.5 489 70.6
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 5.5e-207 724.5 508 68.7
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 4.7e-206 721.5 492 70.5
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 2.3e-205 719.2 468 73.3
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 5.2e-205 718.0 492 69.9
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 2.0e-204 716.1 479 71.6
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.4e-204 715.3 504 68.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 3.7e-203 711.8 473 70.8
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.4e-202 709.9 501 68.3
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 7.0e-202 707.6 502 67.1
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 2.0e-201 706.1 507 68.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.0e-200 703.7 482 69.5
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.3e-200 703.4 509 68.4
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 2.9e-200 702.2 508 68.5
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 6.6e-200 701.0 482 69.5
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 6.6e-200 701.0 440 77.7
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 8.6e-200 700.7 508 68.5
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 8.6e-200 700.7 481 69.2
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.1e-199 700.3 487 69.0
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.1e-199 700.3 487 69.0
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.1e-199 700.3 487 69.0
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.5e-199 699.1 479 69.5
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 4.3e-199 698.4 478 69.7
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 9.5e-199 697.2 482 68.9
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.2e-198 696.8 487 68.2
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.2e-198 696.8 482 69.5
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.1e-198 696.0 509 68.8
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.8e-198 695.7 482 69.1
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.7e-198 694.9 488 67.6
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.0e-197 692.2 450 73.6
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 8.9e-197 690.6 507 65.1
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-196 690.3 506 67.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 2.0e-196 689.5 482 69.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.3e-195 686.8 508 67.3
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.5e-191 673.3 442 72.6
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.3e-191 672.2 481 67.4
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 5.6e-191 671.4 466 68.7
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 9.5e-191 670.6 440 72.7
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 6.8e-189 664.5 440 72.0
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 3.4e-188 662.1 478 65.9
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.3e-187 657.5 408 77.9
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.1e-186 657.1 456 69.1
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.9e-186 656.4 468 68.4
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 3.2e-186 655.6 500 63.4
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.3e-184 650.2 480 66.2
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 3.9e-184 648.7 514 61.3
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 6.6e-184 647.9 473 65.8
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 5.6e-183 644.8 442 71.0
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 2.2e-179 632.9 491 64.2
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.2e-179 632.9 474 66.7
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 5.4e-178 628.2 490 65.3
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 5.1e-176 621.7 453 66.0
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 5.6e-175 618.2 471 63.7
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.6e-175 618.2 388 76.5
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 4.0e-173 612.1 468 65.4
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.1e-170 604.0 491 63.3
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 2.1e-169 599.7 394 72.6
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 2.4e-165 586.3 353 84.4
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 9.0e-165 584.3 440 66.1
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.8e-163 578.9 482 62.7
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 4.6e-153 545.4 479 57.0
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.6e-151 537.7 480 57.9
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 3.8e-147 525.8 493 55.6
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.1e-143 514.2 304 86.5
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.6e-142 510.4 304 85.5
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 3.4e-140 502.7 472 53.6
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 3.4e-140 502.7 317 77.6
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.1e-137 493.4 326 73.0
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.1e-133 479.6 339 68.1
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.5e-132 477.2 462 51.9
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 4.7e-121 439.1 472 50.2
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 5.2e-112 409.1 281 69.8
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 9.7e-111 404.8 380 55.8
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.9e-98 364.0 250 70.4
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 1.6e-97 360.9 607 37.6
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.8e-93 347.4 554 39.9
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 8.3e-78 295.4 457 40.5
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.6e-76 291.2 465 38.9
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 7.3e-74 282.3 211 69.2
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.5e-63 248.1 156 73.1
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 2.8e-49 200.7 240 48.3
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.7e-43 181.4 175 54.9
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.1e-40 170.6 108 80.6
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 9.0e-40 169.1 307 38.1
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.1e-33 147.9 237 39.7
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.0e-30 139.0 117 56.4
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.4e-29 135.2 87 69.0
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 3.5e-28 130.6 100 60.0
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 3.2e-21 107.5 68 83.8
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.3e-19 102.1 69 65.2
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.8e-19 101.7 70 64.3
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 1.8e-19 101.7 89 58.4
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 3.8e-06 57.4 36 75.0


User provided reference genes

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