Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003231 Lotus japonicus HOM05D008249 ORTHO05D010427 5.3e-45 184.1 102 100.0
Glyma.01G064500 Glycine max HOM05D008249 ORTHO05D010427 2.8e-30 135.2 104 76.9
Glyma.02G122400 Glycine max HOM05D008249 ORTHO05D010427 2.8e-30 135.2 104 75.0
VMungo1215G0100 Vigna mungo HOM05D008249 ORTHO05D010427 1.1e-29 133.3 101 70.3
Phvul.003G038500 Phaseolus vulgaris HOM05D008249 ORTHO05D010427 2.4e-29 132.1 101 72.3
Medtr5g047220 Medicago truncatula HOM05D008249 ORTHO05D010427 3.3e-26 121.7 102 63.7
TPR.G38465 Trifolium pratense HOM05D008249 ORTHO05D010427 1.4e-24 116.3 103 63.1
Lalb_Chr17g0341441 Lupinus albus HOM05D008249 ORTHO05D010427 8.9e-24 113.6 102 58.8
Haze_11870 Corylus avellana HOM05D008249 ORTHO05D010427 1.1e-18 96.7 104 51.9
Actinidia13403 Actinidia chinensis HOM05D000485 ORTHO05D000341 1.8e-16 89.4 104 50.0
Manes.05G112900 Manihot esculenta HOM05D008249 ORTHO05D010427 8.9e-16 87.0 105 45.7
Manes.01G024800 Manihot esculenta HOM05D008249 ORTHO05D010427 1.2e-15 86.7 108 46.3
CiPaw.05G122300 Carya illinoinensis HOM05D008249 ORTHO05D010427 1.3e-14 83.2 107 52.3
Hma1.2p1_0428F.1_g150880 Hydrangea macrophylla HOM05D008249 ORTHO05D010427 1.7e-14 82.8 109 53.2
Ah.03g138650 Amaranthus hybridus HOM05D008249 ORTHO05D010427 8.3e-14 80.5 112 50.9
Sabra10G0107000 Salix brachista HOM05D008249 ORTHO05D010427 1.1e-13 80.1 105 48.6
Gohir.D02G131400 Gossypium hirsutum HOM05D008249 ORTHO05D010427 1.4e-13 79.7 112 51.8
Gorai.005G147300 Gossypium raimondii HOM05D008249 ORTHO05D010427 1.8e-13 79.3 112 51.8
Thecc.02G323600 Theobroma cacao HOM05D008249 ORTHO05D010427 1.8e-13 79.3 115 47.8
Ciclev10033881m.g Citrus clementina HOM05D008249 ORTHO05D010427 4.1e-13 78.2 114 52.6
Gohir.A03G106200 Gossypium hirsutum HOM05D008249 ORTHO05D010427 7.0e-13 77.4 110 50.9
Prupe.1G293000 Prunus persica HOM05D008249 ORTHO05D010427 1.2e-12 76.6 91 53.8
Potri.010G138700 Populus trichocarpa HOM05D008249 ORTHO05D010427 2.0e-12 75.9 99 48.5
Nn4g23529 Nelumbo nucifera HOM05D008249 ORTHO05D010427 2.3e-11 72.4 103 43.7
Ah.02g126730 Amaranthus hybridus HOM05D001602 ORTHO05D001470 3.9e-11 71.6 87 52.9
Nn3g17526 Nelumbo nucifera HOM05D008249 ORTHO05D010427 7.3e-10 67.4 102 42.2
Duzib268G1830 Durio zibethinus HOM05D008249 ORTHO05D010427 3.6e-09 65.1 119 42.9
Migut.L01167 Erythranthe guttata HOM05D008249 ORTHO05D010427 3.6e-09 65.1 102 44.1
RcHm_v2.0_Chr4g0437411 Rosa chinensis HOM05D008249 ORTHO05D010427 4.7e-09 64.7 100 47.0
PGR119G2439 Punica granatum HOM05D008249 ORTHO05D010427 1.1e-08 63.5 109 38.5
Potri.008G109150 Populus trichocarpa HOM05D008249 ORTHO05D010427 1.8e-08 62.8 85 45.9
Potri.T139662 Populus trichocarpa HOM05D008249 ORTHO05D010427 1.8e-08 62.8 85 45.9
ATR0827G157 Amborella trichopoda HOM05D008249 ORTHO05D010427 5.8e-07 57.8 97 39.2
COL.COLO4_27817 Corchorus olitorius HOM05D008249 ORTHO05D010427 5.8e-07 57.8 103 47.6
Thhalv10019523m.g Eutrema salsugineum HOM05D008249 ORTHO05D010427 1.7e-06 56.2 106 38.7
Carub.0002s1567 Capsella rubella HOM05D008249 ORTHO05D010427 2.9e-06 55.5 108 38.0
Aa31LG4G11760 Aethionema arabicum HOM05D008249 ORTHO05D010427 6.4e-06 54.3 101 38.6
AL2G28100 Arabidopsis lyrata HOM05D008249 ORTHO05D010427 6.4e-06 54.3 107 40.2
AT1G69050 Arabidopsis thaliana HOM05D008249 ORTHO05D010427 6.4e-06 54.3 107 40.2
Sc11g0002620 Simmondsia chinensis HOM05D008249 ORTHO05D010427 6.4e-06 54.3 39 64.1
THA.LOC104822892 Tarenaya hassleriana HOM05D008249 ORTHO05D010427 6.4e-06 54.3 90 42.2
SGA_v2.0_scaffold16G07819 Striga asiatica HOM05D000037 ORTHO05D051382 8.3e-06 53.9 81 42.0


User provided reference genes

Program Settings