Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 3.3e-92 341.7 169 100.0
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 5.3e-66 254.6 173 78.0
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 7.7e-65 250.8 175 76.6
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 2.2e-64 249.2 174 75.9
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 5.7e-60 234.6 171 73.1
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 8.2e-59 230.7 171 73.7
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 9.4e-55 217.2 178 65.7
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 2.7e-54 215.7 180 65.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 2.6e-52 209.1 129 77.5
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 4.4e-52 208.4 167 65.9
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.8e-51 205.7 143 71.3
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 8.3e-51 204.1 155 72.3
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.1e-50 203.8 161 65.2
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 1.4e-50 203.4 173 61.8
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 3.1e-50 202.2 131 75.6
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 3.1e-50 202.2 127 76.4
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 3.1e-50 202.2 167 62.3
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 4.1e-50 201.8 142 71.8
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.1e-50 201.8 177 59.9
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 5.3e-50 201.4 177 60.5
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 3.5e-49 198.7 124 77.4
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 3.5e-49 198.7 104 89.4
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 4.5e-49 198.4 192 57.3
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 7.7e-49 197.6 123 74.8
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 1.0e-48 197.2 124 79.0
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 1.3e-48 196.8 165 63.6
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.7e-48 196.4 127 74.8
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 2.2e-48 196.1 187 59.9
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 3.8e-48 195.3 121 78.5
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 3.8e-48 195.3 162 61.7
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 5.0e-48 194.9 119 78.2
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 5.0e-48 194.9 189 56.6
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 5.0e-48 194.9 105 83.8
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 6.5e-48 194.5 181 59.1
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 6.5e-48 194.5 148 68.2
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 6.5e-48 194.5 133 72.9
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 8.5e-48 194.1 107 84.1
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.1e-47 193.7 104 85.6
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 1.1e-47 193.7 122 76.2
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.5e-47 193.4 119 76.5
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.9e-47 193.0 103 84.5
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 1.9e-47 193.0 103 84.5
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.5e-47 192.6 104 83.7
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.5e-47 192.6 109 79.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 3.2e-47 192.2 104 83.7
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 3.2e-47 192.2 180 60.0
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 7.2e-47 191.0 106 83.0
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 7.2e-47 191.0 105 82.9
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.6e-46 189.9 97 88.7
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.6e-46 189.9 122 75.4
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 2.7e-46 189.1 105 81.9
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 2.7e-46 189.1 136 69.9
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.7e-46 189.1 100 87.0
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 2.7e-46 189.1 100 87.0
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 3.6e-46 188.7 101 86.1
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 3.6e-46 188.7 130 70.8
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 3.6e-46 188.7 109 78.9
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 4.7e-46 188.3 102 86.3
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 8.0e-46 187.6 109 80.7
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.0e-45 187.2 102 84.3
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.0e-45 187.2 109 77.1
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.4e-45 186.8 102 84.3
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.4e-45 186.8 102 84.3
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.8e-45 186.4 102 84.3
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 1.8e-45 186.4 109 77.1
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 2.3e-45 186.0 108 80.6
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 2.3e-45 186.0 112 79.5
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.3e-45 186.0 129 70.5
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 4.0e-45 185.3 102 83.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 5.2e-45 184.9 102 83.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.8e-45 184.5 105 80.0
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 8.8e-45 184.1 180 58.3
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 8.8e-45 184.1 180 58.3
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 8.8e-45 184.1 141 66.0
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-44 183.7 102 82.4
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-44 183.7 102 82.4
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 1.2e-44 183.7 102 82.4
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.5e-44 183.3 123 70.7
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 2.6e-44 182.6 111 73.9
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 3.4e-44 182.2 104 79.8
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 5.7e-44 181.4 98 82.7
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 7.5e-44 181.0 141 68.8
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.3e-40 170.2 179 54.2
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 1.3e-40 170.2 107 72.0
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.5e-39 166.0 102 73.5
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 3.3e-39 165.6 101 72.3
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.2e-38 163.7 99 73.7
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 4.0e-37 158.7 130 63.1
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 5.2e-37 158.3 95 77.9
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 2.0e-36 156.4 123 68.3
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 2.0e-36 156.4 103 72.8
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 7.5e-36 154.5 111 68.5
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.1e-34 150.6 76 88.2
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.4e-34 150.2 78 87.2
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 1.2e-33 147.1 86 77.9
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.3e-32 143.7 108 60.2
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 7.3e-31 137.9 127 59.1
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 4.0e-29 132.1 101 65.3
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.5e-28 130.2 109 57.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.9e-27 125.9 94 56.4
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.9e-26 123.2 113 53.1
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 7.8e-25 117.9 98 54.1
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.7e-24 116.7 95 54.7
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 6.6e-24 114.8 93 61.3
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.8e-21 106.7 56 87.5
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.8e-21 106.7 139 45.3
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 2.0e-20 103.2 49 87.8
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 5.8e-20 101.7 51 90.2
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 9.8e-20 100.9 52 88.5
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 1.3e-19 100.5 51 88.2
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 1.3e-19 100.5 78 67.9
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.4e-18 97.1 55 78.2
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.4e-18 96.3 73 67.1
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.2e-18 95.9 51 84.3
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.2e-18 95.9 51 84.3
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.2e-18 95.9 51 84.3
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 3.2e-18 95.9 51 84.3
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.5e-17 92.4 52 80.8
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.9e-16 89.0 175 36.6
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-14 83.6 52 69.2
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 7.5e-12 74.7 114 48.2
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 4.9e-11 72.0 41 80.5
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.2e-06 57.4 40 72.5
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 1.2e-06 57.4 42 71.4
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 2.8e-06 56.2 40 72.5
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 2.8e-06 56.2 40 72.5
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 3.6e-06 55.8 104 38.5


User provided reference genes

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