Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.2e-184 648.3 324 100.0
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.1e-125 453.8 325 75.4
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 8.5e-121 437.6 304 74.7
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 2.1e-119 433.0 299 74.9
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.5e-114 415.2 338 68.0
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 6.5e-113 411.4 325 66.8
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 7.5e-109 397.9 392 59.7
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 8.3e-108 394.4 346 61.6
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.1e-107 394.0 262 77.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.8e-107 393.3 346 61.6
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.2e-103 380.6 291 68.0
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.4e-99 366.3 320 61.6
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 5.4e-99 365.2 286 65.7
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.6e-98 363.6 260 68.8
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 5.9e-98 361.7 220 81.4
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.3e-97 360.5 263 67.3
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.7e-97 360.1 255 71.4
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.3e-97 359.8 294 63.6
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.8e-97 359.0 291 64.3
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-96 357.1 260 69.2
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.5e-96 356.3 259 67.2
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.2e-96 355.5 258 69.8
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 5.5e-96 355.1 287 64.1
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.5e-96 354.4 260 68.5
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.2e-95 354.0 263 67.3
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 6.1e-95 351.7 318 59.7
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.3e-94 349.7 259 67.2
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 2.3e-94 349.7 253 69.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.4e-93 345.9 255 67.1
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 9.8e-93 344.4 265 64.2
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.3e-92 344.0 259 64.5
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.1e-91 340.9 282 61.0
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.8e-91 340.1 259 63.7
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 9.2e-91 337.8 251 65.7
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.2e-90 337.4 259 63.7
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.2e-90 337.4 259 64.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.6e-90 337.0 269 63.6
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.0e-90 336.7 261 67.0
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.0e-90 336.7 280 61.1
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.0e-90 336.7 262 62.2
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 4.5e-90 335.5 283 60.1
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 6.6e-89 331.6 258 64.3
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.1e-88 330.9 257 61.9
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 7.3e-88 328.2 259 61.8
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.1e-87 326.6 325 53.8
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.1e-87 326.6 259 61.4
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.8e-87 326.2 260 61.5
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.8e-87 326.2 260 64.2
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 6.1e-87 325.1 264 62.9
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.4e-86 323.9 276 59.4
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.8e-86 323.6 222 69.8
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.8e-86 323.6 279 60.6
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 8.9e-86 321.2 259 61.4
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 2.0e-85 320.1 325 52.9
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 4.4e-85 318.9 237 63.3
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 7.5e-85 318.2 257 61.5
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 7.5e-85 318.2 322 52.8
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 9.8e-85 317.8 297 55.2
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.2e-84 316.6 266 59.8
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 3.7e-84 315.8 314 51.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 6.4e-84 315.1 415 47.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.9e-83 313.5 281 58.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 5.4e-83 312.0 297 56.6
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.2e-82 310.8 219 66.7
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.7e-82 309.7 310 53.2
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 7.8e-82 308.1 221 66.1
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.3e-81 307.4 222 65.3
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 2.3e-81 306.6 222 66.2
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.9e-81 305.8 278 58.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.9e-80 303.5 321 48.9
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 9.5e-80 301.2 260 58.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.1e-78 297.7 260 56.2
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.1e-78 297.7 282 59.2
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.8e-78 297.0 261 58.2
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 7.5e-77 291.6 260 56.2
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.7e-76 290.4 273 52.0
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 6.4e-76 288.5 341 49.6
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.1e-75 287.7 262 53.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.1e-75 287.7 259 55.6
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.4e-75 285.4 261 55.6
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.4e-75 285.4 301 50.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.2e-74 284.3 222 61.7
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.2e-74 284.3 286 50.7
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.6e-74 283.9 292 51.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.6e-74 282.3 286 51.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 7.8e-74 281.6 316 46.8
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.0e-73 281.2 270 51.9
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.3e-73 280.0 259 52.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 3.9e-73 279.3 260 53.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.9e-73 279.3 261 54.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 5.1e-73 278.9 269 52.4
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.1e-72 277.7 299 50.5
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-72 276.6 269 52.8
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 3.3e-72 276.2 287 50.2
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.3e-72 275.0 241 54.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.3e-72 275.0 269 52.0
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.5e-72 274.6 269 51.7
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 9.5e-72 274.6 287 50.2
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-71 274.2 255 52.9
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-71 274.2 255 53.7
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-71 274.2 260 51.9
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.6e-71 273.9 287 50.2
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.1e-71 273.5 268 51.9
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 8.1e-71 271.6 258 52.7
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 8.1e-71 271.6 287 50.9
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.8e-70 270.4 287 50.5
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.8e-70 270.4 261 52.5
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.3e-70 270.0 292 47.3
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 3.1e-70 269.6 278 51.1
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 3.1e-70 269.6 278 51.1
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.8e-70 268.5 261 51.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.0e-69 266.9 283 51.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 9.9e-69 264.6 228 61.4
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-67 260.8 258 51.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.2e-67 259.6 252 51.2
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-65 253.8 250 52.4
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.7e-65 253.8 221 57.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.4e-62 244.2 257 51.0
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 8.9e-62 241.5 259 48.3
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.5e-61 240.7 272 47.8
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.8e-61 238.8 191 61.8
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 2.9e-60 236.5 215 53.5
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 8.4e-60 235.0 191 60.7
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.6e-57 225.3 217 54.8
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.3e-56 223.0 199 57.3
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.8e-55 219.9 214 54.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 3.6e-55 219.5 217 52.5
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.6e-55 219.5 172 62.2
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.8e-55 219.2 218 53.2
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.6e-53 211.8 211 54.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.6e-53 211.8 214 51.9
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.2e-52 210.3 214 50.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 4.9e-52 209.1 214 50.9
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 3.2e-51 206.5 214 50.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 5.4e-51 205.7 311 41.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 9.3e-51 204.9 162 64.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.2e-50 204.5 214 50.0
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.6e-50 204.1 214 49.5
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 2.4e-46 190.3 170 60.0
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 6.9e-46 188.7 163 61.3
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.9e-44 183.3 195 46.7
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 9.3e-43 178.3 227 44.5
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.9e-41 172.9 236 44.5
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 9.6e-40 168.3 136 61.0
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 3.7e-39 166.4 127 64.6
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 4.8e-39 166.0 169 50.3
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.2e-39 165.6 143 58.7
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.5e-35 153.7 267 37.1
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 6.7e-33 145.6 127 58.3
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.9e-32 144.1 132 55.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 4.3e-32 142.9 122 59.0
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 9.6e-32 141.7 120 60.0
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.6e-31 141.0 133 57.1
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.7e-31 139.8 143 51.0
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 8.2e-31 138.7 133 56.4
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.4e-29 133.3 234 35.5
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.0e-28 129.4 180 40.0
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 4.2e-27 126.3 136 47.1
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 7.9e-26 122.1 131 50.4
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.1e-24 118.2 173 39.9
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 4.3e-24 116.3 89 68.5
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.2e-23 114.0 84 63.1
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.1e-22 109.8 77 63.6
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.6e-21 107.1 251 30.3
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.0e-20 102.8 85 67.1
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.9e-17 93.2 89 55.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 9.7e-16 88.6 84 50.0
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 6.9e-14 82.4 174 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 3.6e-10 70.1 178 31.5
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 7.9e-10 68.9 151 29.8
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.8e-07 60.5 149 28.2
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.8e-07 60.5 59 50.8
TPR.G13891 Trifolium pratense HOM05D001860 ORTHO05D004922 3.7e-07 60.1 36 83.3
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 4.8e-07 59.7 143 32.9
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 4.1e-06 56.6 76 43.4
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 7.0e-06 55.8 177 28.2


User provided reference genes

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