Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0002148 Lotus japonicus HOM05D006805 ORTHO05D008656 4.6e-76 287.7 136 100.0
Lj4g0018076 Lotus japonicus HOM05D006805 ORTHO05D008656 5.4e-53 211.1 101 95.0
Phvul.003G257300 Phaseolus vulgaris HOM05D006805 ORTHO05D008656 4.8e-49 198.0 100 86.0
TPR.G21535 Trifolium pratense HOM05D006805 ORTHO05D008656 8.1e-49 197.2 100 89.0
Glyma.02G052900 Glycine max HOM05D006805 ORTHO05D008656 4.0e-48 194.9 100 87.0
arahy.Tifrunner.gnm1.ann1.FKKR7E Arachis hypogaea HOM05D006805 ORTHO05D008656 2.0e-47 192.6 98 85.7
arahy.Tifrunner.gnm1.ann1.P9L48X Arachis hypogaea HOM05D006805 ORTHO05D008656 2.0e-47 192.6 98 85.7
Medtr8g076840 Medicago truncatula HOM05D006805 ORTHO05D008656 3.4e-47 191.8 100 86.0
Psat4g096160 Pisum sativum HOM05D006805 ORTHO05D008656 9.9e-47 190.3 100 84.0
Lalb_Chr16g0391011 Lupinus albus HOM05D006805 ORTHO05D008656 8.4e-46 187.2 101 79.2
VMungo0251G3732 Vigna mungo HOM05D006805 ORTHO05D008656 1.9e-45 186.0 100 80.0
Ca_22341_v3 Cicer arietinum L. HOM05D006805 ORTHO05D008656 4.2e-45 184.9 99 83.8
COL.COLO4_22005 Corchorus olitorius HOM05D006805 ORTHO05D008656 3.0e-43 178.7 97 81.4
Dinv40030 Davidia involucrata HOM05D006805 ORTHO05D008656 2.5e-42 175.6 96 81.2
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 4.3e-42 174.9 97 81.4
Gohir.A02G167800 Gossypium hirsutum HOM05D006805 ORTHO05D008656 9.6e-42 173.7 97 77.3
CANSAT01G1867 Cannabis sativa HOM05D006805 ORTHO05D008656 1.3e-41 173.3 98 76.5
Gorai.003G012500 Gossypium raimondii HOM05D006805 ORTHO05D008656 1.3e-41 173.3 97 77.3
Gohir.D03G012200 Gossypium hirsutum HOM05D006805 ORTHO05D008656 2.8e-41 172.2 97 77.3
Hma1.2p1_0913F.1_g235930 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 2.8e-41 172.2 97 79.4
QL06p035053 Quercus lobata HOM05D006805 ORTHO05D008656 2.8e-41 172.2 97 78.4
Manes.01G140000 Manihot esculenta HOM05D006805 ORTHO05D008656 6.2e-41 171.0 100 75.0
FvH4_1g12510 Fragaria vesca HOM05D006805 ORTHO05D008656 1.4e-40 169.9 97 76.3
FAN19G2522 Fragaria x ananassa HOM05D006805 ORTHO05D008656 3.1e-40 168.7 97 75.3
Potri.007G019400 Populus trichocarpa HOM05D006805 ORTHO05D008656 4.0e-40 168.3 97 76.3
Prupe.7G161800 Prunus persica HOM05D006805 ORTHO05D008656 4.0e-40 168.3 97 77.3
Sed0012409 Sechium edule HOM05D006805 ORTHO05D008656 4.0e-40 168.3 99 71.7
RcHm_v2.0_Chr2g0100411 Rosa chinensis HOM05D006805 ORTHO05D008656 5.3e-40 167.9 97 74.2
Atru.chr3.728 Acer truncatum HOM05D006805 ORTHO05D008656 9.0e-40 167.2 100 72.0
CSS0042312 Camellia sinensis var. sinensis HOM05D006805 ORTHO05D008656 9.0e-40 167.2 97 76.3
CiPaw.08G138000 Carya illinoinensis HOM05D006805 ORTHO05D008656 9.0e-40 167.2 97 74.2
TWI73G0963 Tripterygium wilfordii HOM05D006805 ORTHO05D008656 1.2e-39 166.8 94 78.7
Cfa006913 Carpinus fangiana HOM05D006805 ORTHO05D008656 1.5e-39 166.4 100 71.0
Thecc.01G027300 Theobroma cacao HOM05D006805 ORTHO05D008656 2.6e-39 165.6 99 73.7
MD15G1252400 Malus domestica HOM05D006805 ORTHO05D008656 3.4e-39 165.2 97 76.3
Rhsim08G0122900 Rhododendron simsii HOM05D006805 ORTHO05D008656 3.4e-39 165.2 97 75.3
FAN23G0481 Fragaria x ananassa HOM05D006805 ORTHO05D008656 5.8e-39 164.5 97 74.2
AUR62007618 Chenopodium quinoa HOM05D006805 ORTHO05D008656 9.9e-39 163.7 97 74.2
MELO3C007867.2 Cucumis melo HOM05D006805 ORTHO05D008656 9.9e-39 163.7 97 72.2
Ciclev10025725m.g Citrus clementina HOM05D006805 ORTHO05D008656 1.7e-38 162.9 100 74.0
Duzib147G1209 Durio zibethinus HOM05D006805 ORTHO05D008656 1.7e-38 162.9 97 76.3
Nn1g05800 Nelumbo nucifera HOM05D006805 ORTHO05D008656 1.7e-38 162.9 97 74.2
CsaV3_6G046700 Cucumis sativus L. HOM05D006805 ORTHO05D008656 2.2e-38 162.5 97 72.2
Aqoxy5G01548 Aquilegia oxysepala HOM05D006805 ORTHO05D008656 2.9e-38 162.2 97 73.2
Sabra07G0016600 Salix brachista HOM05D006805 ORTHO05D008656 6.4e-38 161.0 97 73.2
Migut.H02510 Erythranthe guttata HOM05D006805 ORTHO05D008656 8.4e-38 160.6 100 71.0
Eucgr.J02381 Eucalyptus grandis HOM05D006805 ORTHO05D008656 1.4e-37 159.8 100 71.0
Peaxi162Scf00418g00926 Petunia axillaris HOM05D006805 ORTHO05D008656 1.9e-37 159.5 97 72.2
PGR102G0609 Punica granatum HOM05D006805 ORTHO05D008656 1.9e-37 159.5 96 72.9
SGA_v2.0_scaffold51G18803 Striga asiatica HOM05D006805 ORTHO05D008656 1.9e-37 159.5 111 66.7
CAN.G358.30 Capsicum annuum HOM05D006805 ORTHO05D008656 5.5e-37 157.9 97 70.1
MSTRG.2490 Avicennia marina HOM05D006805 ORTHO05D008656 9.3e-37 157.1 122 59.8
Cc07_g10060 Coffea canephora HOM05D006805 ORTHO05D008656 9.3e-37 157.1 97 72.2
Hund16454 Selenicereus undatus HOM05D006805 ORTHO05D008656 1.2e-36 156.8 96 69.8
Solyc02g084810.3 Solanum lycopersicum HOM05D006805 ORTHO05D008656 1.2e-36 156.8 97 69.1
Sopen02g029480 Solanum pennellii HOM05D006805 ORTHO05D008656 1.2e-36 156.8 97 69.1
TAR381G0553 Trochodendron aralioides HOM05D006805 ORTHO05D008656 1.2e-36 156.8 97 71.1
DCAR_025973 Daucus carota HOM05D006805 ORTHO05D008656 1.3e-35 153.3 97 72.2
THA.LOC104804245 Tarenaya hassleriana HOM05D006805 ORTHO05D008656 1.3e-35 153.3 97 68.0
Haze_03843 Corylus avellana HOM05D006805 ORTHO05D008656 2.5e-34 149.1 128 53.9
BolC1t00250H Brassica oleracea HOM05D006805 ORTHO05D008656 5.6e-34 147.9 96 66.7
ECA238G0382 Erigeron canadensis HOM05D006805 ORTHO05D008656 5.6e-34 147.9 98 66.3
Thhalv10000178m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 5.6e-34 147.9 96 66.7
HPP92_008328 Vanilla planifolia HOM05D006805 ORTHO05D008656 5.6e-34 147.9 101 66.3
Aa31LG6G13250 Aethionema arabicum HOM05D006805 ORTHO05D008656 1.3e-33 146.7 96 66.7
AL7G14650 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 1.6e-33 146.4 96 66.7
CARHR244770 Cardamine hirsuta HOM05D006805 ORTHO05D008656 1.6e-33 146.4 96 65.6
PSO731G0058 Papaver somniferum HOM05D006805 ORTHO05D008656 1.6e-33 146.4 96 68.8
BcaNung00732 Brassica carinata HOM05D006805 ORTHO05D008656 3.7e-33 145.2 96 65.6
C01p02610 Brassica napus HOM05D006805 ORTHO05D008656 3.7e-33 145.2 96 65.6
Thhalv10025347m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 3.7e-33 145.2 96 66.7
BraA01t00229Z Brassica rapa HOM05D006805 ORTHO05D008656 6.2e-33 144.4 96 64.6
HanXRQChr14g0441241 Helianthus annuus HOM05D006805 ORTHO05D008656 6.2e-33 144.4 97 64.9
Sp7g34100 Schrenkiella parvula HOM05D006805 ORTHO05D008656 1.4e-32 143.3 96 65.6
arahy.Tifrunner.gnm1.ann1.CY3TH7 Arachis hypogaea HOM05D006805 ORTHO05D008656 3.1e-32 142.1 82 79.3
Carub.0007s0387 Capsella rubella HOM05D006805 ORTHO05D008656 5.3e-32 141.4 96 64.6
AL6G38800 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 1.2e-31 140.2 98 65.3
MBI16_g23836_MAGBIO Magnolia biondii HOM05D006805 ORTHO05D008656 1.2e-31 140.2 98 65.3
Cpa.g.sc6.179 Carica papaya HOM05D006805 ORTHO05D008656 1.1e-29 133.7 78 73.1
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 1.9e-29 132.9 76 73.7
A01p02400 Brassica napus HOM05D000394 ORTHO05D008656 5.5e-29 131.3 121 52.1
Nitab4.5_0004708g0010 Nicotiana tabacum HOM05D006805 ORTHO05D008656 2.1e-28 129.4 78 71.8
Zm00001eb128340 Zea mays HOM05D006805 ORTHO05D008656 6.0e-28 127.9 98 58.2
ATR1154G040 Amborella trichopoda HOM05D006805 ORTHO05D008656 1.0e-27 127.1 100 60.0
vmacro17722 Vaccinium macrocarpon HOM05D006805 ORTHO05D008656 1.3e-27 126.7 102 58.8
BcaNung05308 Brassica carinata HOM05D000394 ORTHO05D000299 8.7e-27 124.0 94 54.3
AT4G36440 Arabidopsis thaliana HOM05D006805 ORTHO05D008656 8.2e-25 117.5 96 57.3
FAN26G3258 Fragaria x ananassa HOM05D006805 ORTHO05D008656 8.2e-25 117.5 67 76.1
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 1.1e-24 117.1 68 75.0
Duzib264G1030 Durio zibethinus HOM05D006805 ORTHO05D008656 1.8e-24 116.3 97 57.7
Hma1.2p1_2955F.1_g330740 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 1.5e-23 113.2 117 50.4
CDE06G0805 Ceratophyllum demersum HOM05D006805 ORTHO05D008656 3.8e-22 108.6 120 50.8
SalBow8G5631 Salvia bowleyana HOM05D006805 ORTHO05D008656 2.5e-21 105.9 77 55.8
HanXRQChr16g0499431 Helianthus annuus HOM05D006805 ORTHO05D008656 1.1e-16 90.5 77 61.0
Os01g0262700 Oryza sativa ssp. japonica HOM05D006805 ORTHO05D008656 1.4e-16 90.1 65 63.1
AagrBONN_evm.TU.Sc2ySwM_228.1023 Anthoceros agrestis HOM05D006805 ORTHO05D001783 3.4e-15 85.5 97 46.4
SMO141G0060 Selaginella moellendorffii HOM05D006805 ORTHO05D008656 3.4e-15 85.5 94 46.8
Nitab4.5_0000723g0180 Nicotiana tabacum HOM05D006805 ORTHO05D008656 5.9e-15 84.7 79 53.2
EL10As8g23891 Beta vulgaris HOM05D006805 ORTHO05D008656 1.7e-14 83.2 48 70.8
Pp3c9_15730 Physcomitrium patens HOM05D006805 ORTHO05D008656 3.2e-13 79.0 99 43.4
unitig_61.g26353 Utricularia gibba HOM05D006805 ORTHO05D008656 4.2e-13 78.6 51 62.7
Hma1.2p1_0913F.1_g235940 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 5.5e-13 78.2 39 84.6
Mapoly0033s0048 Marchantia polymorpha HOM05D006805 ORTHO05D008656 2.1e-12 76.3 108 35.2
Pp3c15_5920 Physcomitrium patens HOM05D006805 ORTHO05D008656 3.0e-11 72.4 99 41.4
HanXRQChr12g0370281 Helianthus annuus HOM05D006805 ORTHO05D008656 4.8e-09 65.1 42 69.0


User provided reference genes

Program Settings