Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 8.7e-125 450.3 223 100.0
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.0e-64 250.8 173 79.2
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.9e-51 206.1 175 62.9
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 8.3e-51 204.5 173 62.4
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 5.4e-50 201.8 145 70.3
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 7.1e-50 201.4 145 70.3
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.0e-48 197.6 157 66.2
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.1e-45 186.0 145 63.4
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 5.2e-45 185.3 146 67.1
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.3e-43 180.6 144 61.8
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 3.8e-43 179.1 173 54.3
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 4.9e-43 178.7 139 65.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 6.6e-40 168.3 134 60.4
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 6.6e-40 168.3 132 66.7
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 8.6e-40 167.9 178 52.2
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.5e-39 167.2 173 52.6
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.5e-39 167.2 145 57.2
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.5e-39 166.4 145 57.2
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 3.3e-39 166.0 145 55.9
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 7.3e-39 164.9 162 56.2
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 7.3e-39 164.9 178 51.7
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 9.6e-39 164.5 161 54.7
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 3.6e-38 162.5 134 60.4
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.8e-37 160.2 156 53.2
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 3.1e-37 159.5 177 52.0
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 4.0e-37 159.1 156 53.2
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 6.9e-37 158.3 153 52.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.5e-36 157.1 178 51.1
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 2.0e-36 156.8 161 52.8
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.8e-36 155.2 161 51.6
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.6e-36 154.8 173 50.3
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.7e-35 153.7 173 49.7
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.2e-35 153.3 131 59.5
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.9e-35 152.9 153 50.3
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.9e-35 152.9 153 50.3
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 2.9e-35 152.9 145 52.4
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 4.9e-35 152.1 138 56.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 6.4e-35 151.8 160 50.0
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 6.4e-35 151.8 165 49.7
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.4e-34 148.7 156 50.0
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 7.1e-34 148.3 152 52.0
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.2e-33 147.5 145 53.8
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.2e-33 147.5 145 51.0
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 1.2e-33 147.5 143 51.7
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.5e-33 146.0 154 49.4
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.6e-33 145.6 156 50.6
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 6.0e-33 145.2 156 51.3
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.0e-33 145.2 139 54.0
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 7.8e-33 144.8 139 54.7
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.8e-33 144.8 178 47.2
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.0e-32 144.4 155 49.0
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.3e-32 143.3 135 54.1
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 3.0e-32 142.9 156 49.4
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 3.0e-32 142.9 156 48.7
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 8.7e-32 141.4 141 52.5
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.1e-31 141.0 169 47.3
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.5e-31 140.6 156 47.4
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.9e-31 140.2 131 55.7
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.9e-31 140.2 139 52.5
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.9e-31 140.2 173 46.2
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.3e-31 139.4 133 52.6
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.3e-31 139.4 157 49.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.3e-31 139.4 128 53.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 4.3e-31 139.0 151 49.0
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.6e-31 138.7 160 45.6
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 5.6e-31 138.7 144 48.6
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 7.3e-31 138.3 159 49.1
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 9.6e-31 137.9 139 50.4
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 9.6e-31 137.9 140 49.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 9.6e-31 137.9 160 46.9
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 9.6e-31 137.9 156 48.7
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.3e-30 137.5 139 49.6
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.6e-30 137.1 188 43.6
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 2.1e-30 136.7 163 45.4
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 3.6e-30 136.0 148 50.0
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 3.6e-30 136.0 145 51.0
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 3.6e-30 136.0 132 53.8
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 6.2e-30 135.2 136 51.5
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 8.1e-30 134.8 146 47.9
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 8.1e-30 134.8 145 51.0
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.1e-29 134.4 136 49.3
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 1.1e-29 134.4 147 46.9
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-29 134.0 146 50.0
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-29 134.0 164 45.1
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.8e-29 133.7 139 51.8
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.8e-29 133.7 141 48.2
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.8e-29 133.7 141 48.2
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 2.4e-29 133.3 146 44.5
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.4e-29 133.3 159 45.3
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 3.1e-29 132.9 143 49.7
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.1e-29 132.9 128 53.9
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 4.0e-29 132.5 156 46.8
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 5.3e-29 132.1 135 51.1
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.3e-29 132.1 141 49.6
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 9.0e-29 131.3 145 48.3
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-28 131.0 143 49.0
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 2.6e-28 129.8 144 46.5
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 3.4e-28 129.4 141 49.6
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 4.5e-28 129.0 142 49.3
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 4.5e-28 129.0 146 43.2
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 7.6e-28 128.3 156 44.2
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 9.9e-28 127.9 164 44.5
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 9.9e-28 127.9 156 42.9
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 9.9e-28 127.9 139 51.1
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 9.9e-28 127.9 147 44.9
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 9.9e-28 127.9 147 44.9
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 2.2e-27 126.7 139 48.9
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 3.8e-27 125.9 143 49.7
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 4.9e-27 125.6 128 50.8
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 6.4e-27 125.2 143 48.3
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 8.4e-27 124.8 144 46.5
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 8.4e-27 124.8 156 46.8
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 8.4e-27 124.8 150 46.0
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-26 124.4 144 46.5
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.1e-26 124.4 128 47.7
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-26 124.0 134 47.8
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-26 124.0 157 45.9
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-26 124.0 157 45.9
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.9e-26 123.6 160 46.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.9e-26 123.6 144 46.5
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 2.4e-26 123.2 139 48.2
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.2e-26 122.9 156 44.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-26 122.5 144 45.8
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 4.2e-26 122.5 144 45.8
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.2e-26 122.5 143 45.5
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 7.1e-26 121.7 128 49.2
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 9.3e-26 121.3 128 49.2
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 9.3e-26 121.3 156 44.2
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 9.3e-26 121.3 140 48.6
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.2e-25 120.9 162 43.8
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.2e-25 120.9 112 58.0
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.2e-25 120.9 156 43.6
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.6e-25 120.6 137 44.5
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.7e-25 119.8 162 43.2
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 6.0e-25 118.6 154 45.5
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.3e-24 117.5 163 39.3
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.3e-24 116.7 128 46.9
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-24 116.7 161 42.9
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 6.7e-24 115.2 182 40.1
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 7.4e-23 111.7 154 39.6
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.8e-22 109.8 131 45.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.4e-21 107.5 135 46.7
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.4e-21 106.7 142 41.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.0e-21 105.9 118 49.2
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 5.3e-21 105.5 153 37.3
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.3e-19 100.9 129 44.2
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-18 97.8 86 51.2
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-17 93.6 125 43.2
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 2.7e-17 93.2 141 38.3
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.0e-17 92.0 110 45.5
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-16 90.5 110 44.5
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.8e-16 90.5 86 48.8
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 3.0e-16 89.7 136 39.7
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 4.8e-14 82.4 130 39.2
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-13 80.5 101 45.5
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.0e-12 77.0 102 42.2
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 2.6e-12 76.6 137 36.5
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-10 71.2 84 46.4
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.0e-08 63.2 88 36.4
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.9e-07 60.5 133 33.8
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.9e-07 60.5 67 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 3.3e-07 59.7 86 40.7
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.3e-07 59.7 53 49.1
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 1.3e-06 57.8 34 79.4
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 8.2e-06 55.1 50 48.0


User provided reference genes

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