Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 5.1e-93 344.4 170 100.0
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 2.9e-80 302.0 170 87.6
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 5.0e-80 301.2 170 87.6
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.2e-79 298.5 170 85.9
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 9.4e-79 297.0 170 87.6
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 2.1e-78 295.8 167 86.8
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.2e-75 285.8 165 84.8
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.4e-74 283.1 165 85.5
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 3.1e-74 282.0 176 80.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.7e-73 278.9 170 82.4
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.7e-73 278.9 168 81.5
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 4.5e-73 278.1 168 81.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.0e-72 276.9 155 85.2
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.0e-72 276.9 164 82.9
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.3e-72 276.6 168 81.5
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.3e-72 276.6 181 76.2
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 166 80.1
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.7e-72 276.2 168 81.0
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.7e-72 276.2 168 81.5
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 168 79.2
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 2.2e-72 275.8 181 75.7
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.9e-72 275.4 176 79.5
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 3.8e-72 275.0 178 77.0
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 3.8e-72 275.0 168 80.4
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 3.8e-72 275.0 170 80.6
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 5.0e-72 274.6 181 74.6
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.0e-72 274.6 165 81.8
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 6.5e-72 274.2 170 78.8
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.5e-72 273.9 167 78.4
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 8.5e-72 273.9 168 80.4
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 8.5e-72 273.9 181 76.2
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-71 273.5 168 80.4
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.5e-71 273.1 166 79.5
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.5e-71 273.1 168 81.0
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.5e-71 273.1 168 78.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.9e-71 272.7 166 79.5
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 2.5e-71 272.3 168 81.0
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.5e-71 272.3 178 77.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.2e-71 271.9 175 77.1
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 3.2e-71 271.9 166 78.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.2e-71 271.9 178 77.5
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.2e-71 271.9 168 80.4
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 4.2e-71 271.6 168 79.2
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.2e-71 271.6 164 79.9
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.2e-71 271.6 166 78.9
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 4.2e-71 271.6 149 86.6
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 4.2e-71 271.6 167 79.6
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.2e-71 270.8 165 80.0
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.2e-71 270.8 168 78.0
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 9.4e-71 270.4 178 76.4
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 9.4e-71 270.4 166 78.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 9.4e-71 270.4 166 78.3
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 9.4e-71 270.4 164 79.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 9.4e-71 270.4 170 78.8
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.2e-70 270.0 168 77.4
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.2e-70 270.0 164 79.3
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.2e-70 270.0 168 77.4
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.2e-70 270.0 168 78.0
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.2e-70 270.0 178 75.8
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.2e-70 270.0 168 78.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.2e-70 270.0 171 79.5
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.6e-70 269.6 164 82.3
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.6e-70 269.6 171 78.9
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.6e-70 268.5 169 78.1
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.6e-70 268.5 174 77.6
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 3.6e-70 268.5 168 79.2
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 4.7e-70 268.1 164 79.3
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 4.7e-70 268.1 164 79.3
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 6.1e-70 267.7 172 77.9
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 8.0e-70 267.3 165 78.2
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 8.0e-70 267.3 162 82.1
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-69 266.9 171 78.4
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.0e-69 266.9 167 77.2
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.0e-69 266.9 168 77.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.0e-69 266.9 165 80.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-69 266.5 164 78.7
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.8e-69 266.2 171 78.4
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-69 266.2 171 78.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.8e-69 266.2 168 78.0
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.8e-69 266.2 174 78.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.8e-69 266.2 169 78.7
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.3e-69 265.8 164 78.0
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.3e-69 265.8 173 75.1
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.3e-69 265.8 155 81.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.3e-69 265.8 171 78.4
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 3.0e-69 265.4 151 84.8
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.0e-69 265.0 174 77.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.0e-69 265.0 168 79.2
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 5.2e-69 264.6 168 76.8
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.2e-69 264.6 171 77.8
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.2e-69 264.6 168 77.4
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.2e-69 264.6 168 77.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 5.2e-69 264.6 174 77.6
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.8e-69 264.2 168 76.2
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.8e-69 264.2 171 77.8
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.8e-69 264.2 171 77.8
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 8.8e-69 263.8 168 78.0
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.8e-69 263.8 169 77.5
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.8e-69 263.8 169 77.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-68 263.5 170 77.1
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.0e-68 262.7 172 75.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 3.4e-68 261.9 169 75.7
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.4e-68 261.9 168 76.2
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 168 75.6
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 4.4e-68 261.5 169 76.3
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 4.4e-68 261.5 168 76.8
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 175 76.0
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 7.5e-68 260.8 175 76.0
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 9.8e-68 260.4 174 76.4
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.7e-67 259.6 170 75.3
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.2e-67 259.2 167 75.4
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.8e-67 258.8 167 77.2
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 4.8e-67 258.1 159 78.0
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 4.8e-67 258.1 166 77.1
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 168 75.0
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 175 74.9
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.8e-66 256.1 168 73.8
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.8e-66 256.1 153 83.7
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 3.1e-66 255.4 149 83.9
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.1e-66 255.4 165 76.4
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 5.4e-66 254.6 170 75.3
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.0e-66 254.2 168 75.0
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.0e-66 254.2 168 75.0
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 7.0e-66 254.2 146 84.2
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.6e-65 253.1 173 73.4
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.6e-65 253.1 173 73.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.7e-65 252.3 158 75.9
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.7e-65 252.3 158 75.9
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.5e-65 251.5 172 72.1
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.3e-64 250.0 172 72.1
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 2.5e-63 245.7 151 79.5
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.2e-63 245.4 228 58.8
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.6e-62 243.0 159 74.8
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.7e-62 242.3 159 74.2
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.3e-59 230.7 163 68.7
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.8e-58 229.6 153 71.9
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.4e-58 229.2 153 71.9
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.0e-56 223.8 140 77.1
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.1e-55 220.3 167 66.5
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.0e-53 211.8 164 65.2
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 5.2e-53 211.5 126 80.2
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.4e-50 203.4 126 77.0
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 2.7e-49 199.1 165 57.0
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.6e-46 189.9 130 72.3
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.3e-43 180.3 108 85.2
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 4.9e-43 178.3 134 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.4e-42 176.0 134 62.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.4e-42 174.9 155 60.6
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.2e-41 173.7 109 75.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 7.8e-41 171.0 134 60.4
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.7e-40 169.9 133 58.6
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.5e-39 166.0 185 50.3
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.9e-35 151.8 168 53.0
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.4e-34 150.2 91 78.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.3e-32 143.7 88 80.7
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 5.1e-32 141.7 120 55.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.1e-31 140.6 86 81.4
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 3.4e-28 129.0 98 67.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.9e-28 127.5 103 62.1
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.1e-26 121.3 105 65.7
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.1e-24 115.2 120 47.5
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 9.6e-23 110.9 56 85.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.7e-22 108.6 184 38.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.4e-21 106.3 71 73.2
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.0e-21 105.5 138 42.8
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.0e-21 105.5 138 42.8
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.4e-19 98.2 168 39.9
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 6.4e-19 98.2 66 68.2
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.0e-16 90.9 100 44.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.0e-16 90.9 100 44.0
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.0e-16 89.4 63 66.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.6e-15 85.1 52 78.8
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 7.3e-15 84.7 64 64.1
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 3.1e-13 79.3 95 40.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.4e-12 75.9 52 59.6
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 7.1e-10 68.2 95 41.1
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 8.1e-06 54.7 97 38.1


User provided reference genes

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