Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 2.3e-309 1064.7 522 100.0
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 1.2e-257 892.9 523 81.8
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 2.9e-256 888.3 526 82.9
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 4.7e-254 880.9 523 81.1
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 8.3e-251 870.2 523 80.5
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 3.1e-250 868.2 523 80.3
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 3.5e-249 864.8 515 81.4
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 8.6e-248 860.1 519 80.3
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.6e-246 855.9 515 79.8
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 2.8e-246 855.1 523 79.0
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 1.5e-244 849.4 515 79.0
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 3.4e-244 848.2 515 78.8
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 4.4e-244 847.8 520 79.6
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.9e-243 844.3 515 79.8
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 3.1e-242 841.6 556 76.6
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 2.9e-240 835.1 520 76.0
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 6.6e-240 833.9 520 76.9
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 8.6e-240 833.6 520 77.9
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 5.6e-239 830.9 520 75.8
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 2.1e-238 828.9 520 77.1
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.0e-237 826.6 520 76.9
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.8e-237 825.9 520 77.3
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.3e-237 825.5 522 77.0
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.3e-237 825.5 520 77.3
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.0e-237 825.1 520 76.2
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 6.8e-237 823.9 520 77.1
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 8.9e-237 823.5 520 75.8
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 2.0e-236 822.4 520 76.5
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.6e-236 822.0 520 77.3
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 4.4e-236 821.2 520 76.5
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 2.9e-235 818.5 491 80.2
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.9e-235 818.5 520 76.0
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.3e-235 817.0 521 76.0
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.1e-234 816.6 516 76.7
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.4e-234 815.5 520 75.4
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 2.4e-234 815.5 515 76.9
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.2e-234 815.1 521 75.6
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 3.2e-234 815.1 521 75.8
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.4e-234 814.3 524 76.3
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 5.4e-234 814.3 521 75.4
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.2e-234 813.5 524 76.1
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 2.0e-233 812.4 519 75.7
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 2.7e-233 812.0 520 75.4
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 2.7e-233 812.0 520 74.6
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 3.5e-233 811.6 516 76.4
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 3.5e-233 811.6 518 76.3
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.6e-233 811.2 524 76.0
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 6.0e-233 810.8 521 75.6
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 7.8e-233 810.4 520 74.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-232 809.7 520 75.2
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.3e-232 809.7 521 74.9
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.3e-232 809.7 520 75.4
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.0e-232 808.5 520 76.0
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 3.9e-232 808.1 521 74.7
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.9e-232 808.1 519 75.3
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 3.9e-232 808.1 521 75.6
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 5.0e-232 807.7 521 74.5
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 5.0e-232 807.7 520 75.6
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 6.6e-232 807.4 526 75.3
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 8.6e-232 807.0 521 74.1
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.5e-231 806.2 521 75.4
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.5e-231 806.2 520 73.3
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.9e-231 805.8 554 72.6
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 1.9e-231 805.8 546 72.2
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.9e-231 805.8 545 72.3
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 4.3e-231 804.7 520 74.4
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 5.6e-231 804.3 521 73.9
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 5.6e-231 804.3 520 75.0
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 9.5e-231 803.5 521 74.1
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.2e-230 803.1 520 74.6
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.6e-230 802.7 519 74.6
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 1.6e-230 802.7 521 73.9
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.1e-230 802.4 520 75.0
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-230 802.4 521 73.7
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 2.8e-230 802.0 521 73.5
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.8e-230 802.0 520 75.6
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 3.6e-230 801.6 521 73.7
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 3.6e-230 801.6 521 73.7
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 6.2e-230 800.8 519 74.0
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 8.0e-230 800.4 516 74.4
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 8.0e-230 800.4 516 74.4
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.3e-229 798.9 516 75.2
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 2.3e-229 798.9 515 75.5
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 4.0e-229 798.1 517 74.5
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 5.2e-229 797.7 519 73.8
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.2e-229 797.7 530 74.3
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-228 796.6 519 73.6
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.2e-228 796.6 519 73.6
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.7e-227 792.7 520 74.2
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 2.2e-227 792.3 520 73.8
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.9e-227 791.2 520 75.0
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 4.9e-227 791.2 467 79.7
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 6.4e-227 790.8 522 74.9
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.1e-226 790.0 473 78.4
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 9.2e-226 786.9 520 73.5
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 7.8e-225 783.9 517 73.3
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.8e-225 783.9 520 73.1
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 2.3e-224 782.3 520 73.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.3e-224 782.3 520 75.0
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 3.0e-224 781.9 544 71.7
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 3.9e-224 781.6 521 74.7
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.9e-224 781.6 520 73.7
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 1.1e-223 780.0 520 74.6
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.5e-223 779.6 520 74.6
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 1.9e-223 779.2 530 72.5
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 2.1e-222 775.8 520 72.7
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 6.2e-222 774.2 520 72.3
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 5.2e-221 771.2 517 72.9
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.5e-220 769.6 489 76.5
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.7e-219 766.1 524 73.5
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 2.4e-218 762.3 528 70.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 2.1e-217 759.2 521 70.6
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 2.1e-217 759.2 520 72.1
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.5e-217 758.4 516 72.9
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 4.6e-217 758.1 468 78.0
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 3.0e-216 755.4 518 71.0
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 3.9e-216 755.0 466 78.3
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 5.1e-216 754.6 521 70.4
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 7.3e-215 750.7 520 71.0
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 3.6e-214 748.4 475 76.0
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 6.8e-213 744.2 466 76.6
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.5e-212 743.0 515 70.5
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.6e-212 742.3 520 70.8
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.4e-212 741.9 520 70.8
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 4.4e-212 741.5 516 69.6
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 7.6e-212 740.7 516 69.6
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.3e-211 740.0 471 74.7
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.8e-211 738.4 519 70.5
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 5.4e-210 734.6 511 70.3
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 4.7e-206 721.5 520 67.7
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 8.1e-206 720.7 520 67.7
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 6.9e-205 717.6 521 68.5
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 3.4e-204 715.3 575 63.3
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.1e-202 710.3 550 65.8
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.3e-200 703.4 520 66.7
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 5.1e-200 701.4 520 67.9
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.8e-197 693.0 522 67.4
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 3.1e-197 692.2 561 64.2
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.9e-194 682.9 520 66.2
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 9.6e-191 670.6 525 64.4
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.0e-184 650.6 501 67.5
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 5.6e-183 644.8 502 66.3
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.6e-182 643.3 381 79.8
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 3.7e-182 642.1 380 81.1
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 4.8e-182 641.7 377 79.6
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 6.0e-177 624.8 481 64.2
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.1e-165 587.4 447 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.2e-164 583.9 490 57.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 3.8e-163 578.9 555 56.4
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 4.7e-153 545.4 477 55.8
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.0e-147 527.7 451 57.9
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.3e-139 500.7 292 82.9
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 5.0e-139 498.8 353 70.0
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 6.6e-123 445.3 287 71.4
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 9.5e-122 441.4 292 73.6
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.1e-120 436.4 265 75.8
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.5e-114 417.5 287 73.2
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 2.8e-113 413.3 288 74.0
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.9e-99 366.3 251 69.3
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 9.5e-98 361.7 242 71.5
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.7e-73 280.0 205 66.3
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 6.1e-60 236.1 481 32.8
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 1.4e-53 214.9 139 71.2
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 3.2e-53 213.8 469 31.3
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.7e-36 156.8 206 45.6
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 3.3e-34 150.6 109 66.1
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.2e-26 125.6 140 49.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 5.0e-22 110.2 65 75.4
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.4e-19 102.1 85 61.2
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.0e-19 100.5 142 45.1
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 2.0e-18 98.2 156 35.9
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 1.3e-17 95.5 61 72.1
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.8e-11 75.1 169 37.3
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 4.1e-08 63.9 55 60.0
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 5.0e-06 57.0 47 55.3


User provided reference genes

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