Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 8.0e-126 453.8 226 100.0
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.1e-106 390.2 219 89.0
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 6.0e-105 384.4 227 84.1
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 1.8e-101 372.9 230 80.9
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 2.0e-100 369.4 221 81.9
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 2.6e-100 369.0 227 81.1
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.2e-97 360.1 229 78.2
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.6e-96 354.4 217 77.9
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 3.6e-94 348.6 219 79.9
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 2.3e-93 345.9 226 76.5
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 8.9e-93 344.0 225 75.1
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.5e-92 343.2 231 74.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 2.0e-92 342.8 224 74.6
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 6.4e-91 337.8 226 72.6
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 4.1e-90 335.1 226 73.9
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 5.4e-90 334.7 217 74.2
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.6e-89 333.2 226 71.7
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.1e-89 332.8 226 71.7
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 3.5e-89 332.0 218 76.1
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.3e-88 330.1 218 74.3
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.9e-87 326.2 184 88.0
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.9e-87 326.2 212 72.6
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 2.5e-87 325.9 221 71.0
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.3e-87 325.1 217 72.8
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 4.3e-87 325.1 217 72.8
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 4.3e-87 325.1 217 73.7
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 7.3e-87 324.3 217 72.4
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 9.6e-87 323.9 218 72.5
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.2e-86 323.6 217 72.4
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.6e-86 323.2 226 71.7
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.6e-86 323.2 220 71.8
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.6e-86 323.2 217 71.4
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.6e-86 323.2 218 73.4
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 2.1e-86 322.8 223 71.3
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.8e-86 322.4 217 72.4
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.8e-86 322.4 218 71.1
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 3.6e-86 322.0 215 75.3
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 3.6e-86 322.0 219 70.8
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 3.6e-86 322.0 217 73.3
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.7e-86 321.6 226 71.2
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 8.1e-86 320.9 224 67.9
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.4e-85 320.1 226 70.4
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.4e-85 320.1 219 72.1
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 4.0e-85 318.5 209 71.8
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 8.9e-85 317.4 226 67.7
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.5e-84 316.6 226 65.5
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.6e-84 315.8 220 65.5
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.4e-84 315.1 220 69.5
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.7e-83 313.2 231 65.8
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 8.4e-83 310.8 220 66.8
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 8.4e-83 310.8 220 65.5
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 8.4e-83 310.8 220 68.2
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.1e-82 310.5 220 65.0
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.9e-82 309.7 215 69.3
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.4e-82 309.3 215 68.8
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.4e-82 309.3 211 69.2
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.2e-82 308.9 215 68.4
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 3.2e-82 308.9 215 67.9
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 7.1e-82 307.8 217 68.2
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 7.1e-82 307.8 219 70.3
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 7.1e-82 307.8 215 68.4
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.2e-81 307.0 221 70.1
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.2e-81 307.0 215 68.4
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.6e-81 306.6 213 69.5
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.1e-81 306.2 207 70.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.7e-81 305.8 219 68.5
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 4.6e-81 305.1 215 67.4
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 6.0e-81 304.7 216 69.9
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 7.8e-81 304.3 221 69.7
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.0e-80 303.9 215 68.4
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.0e-80 303.9 177 84.7
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-80 303.5 221 68.3
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.3e-80 303.5 217 68.7
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.3e-80 302.8 220 67.3
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 3.0e-80 302.4 220 67.7
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 3.0e-80 302.4 221 68.3
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 3.0e-80 302.4 221 68.3
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 3.0e-80 302.4 218 68.3
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 3.9e-80 302.0 215 69.3
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 3.9e-80 302.0 222 65.8
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 5.1e-80 301.6 220 66.8
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.3e-78 297.0 219 67.6
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 1.6e-78 296.6 205 74.6
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.1e-78 296.2 217 65.9
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.1e-78 296.2 217 65.9
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 3.6e-78 295.4 204 69.1
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 8.1e-78 294.3 224 65.6
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 8.1e-78 294.3 204 68.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.4e-77 292.7 226 62.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.2e-76 290.4 172 83.1
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 2.6e-76 289.3 220 66.8
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.6e-76 289.3 283 55.8
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 2.6e-76 289.3 227 63.4
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 5.8e-76 288.1 218 65.1
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.9e-75 285.8 207 67.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.1e-74 283.9 212 61.3
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 3.2e-74 282.3 164 84.8
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 4.6e-73 278.5 221 61.5
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.0e-72 277.3 211 59.7
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 5.1e-72 275.0 214 63.1
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 6.6e-72 274.6 201 68.7
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.5e-71 272.7 217 62.2
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 5.6e-71 271.6 201 67.2
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.6e-70 270.0 213 58.2
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.4e-69 266.2 199 61.8
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 4.0e-69 265.4 203 62.1
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.4e-68 262.3 214 57.9
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 1.7e-67 260.0 181 70.2
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 2.2e-67 259.6 222 59.0
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.2e-67 259.6 165 75.2
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.9e-67 259.2 216 56.0
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.1e-66 257.3 207 60.9
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 7.1e-66 254.6 222 58.6
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.6e-65 251.9 201 58.7
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.6e-65 251.9 201 58.7
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.0e-64 250.8 209 58.4
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.9e-63 246.5 148 80.4
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 3.7e-62 242.3 151 77.5
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 6.2e-62 241.5 205 57.1
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 2.4e-61 239.6 208 61.1
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.0e-61 237.7 205 55.6
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 1.9e-58 229.9 162 67.3
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.2e-58 229.2 168 63.1
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.1e-57 226.5 218 53.2
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.9e-57 224.6 226 54.0
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.1e-55 220.7 220 56.4
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 5.7e-55 218.4 222 49.5
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 6.3e-54 214.9 222 50.9
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 1.4e-53 213.8 217 53.5
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.0e-52 209.9 226 46.5
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 2.6e-52 209.5 200 52.5
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.4e-52 209.1 211 51.7
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 8.4e-51 204.5 215 47.4
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 6.1e-49 198.4 220 52.3
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.4e-45 187.2 162 51.9
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 7.9e-41 171.4 109 75.2
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.0e-40 171.0 226 40.7
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 1.0e-40 171.0 213 42.3
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.4e-40 170.6 213 46.0
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 1.5e-39 167.2 144 63.9
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 4.8e-38 162.2 311 32.2
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 8.2e-38 161.4 199 47.2
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.8e-35 152.5 209 38.8
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 3.2e-34 149.4 91 76.9
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 9.4e-34 147.9 89 74.2
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.7e-33 145.6 127 59.8
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.3e-32 143.3 212 38.2
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.3e-32 143.3 96 68.8
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 5.7e-31 138.7 203 37.9
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.6e-28 130.6 184 45.1
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.5e-26 124.0 89 68.5
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 5.2e-24 115.5 128 43.0
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 5.7e-23 112.1 90 60.0
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 1.5e-15 87.4 197 35.0
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.1e-13 79.7 92 43.5
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.5e-12 75.9 65 60.0
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 8.8e-08 61.6 43 67.4
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 4.4e-07 59.3 45 62.2
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 3.7e-06 56.2 42 61.9


User provided reference genes

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