Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 5.2e-82 307.8 165 100.0
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 4.6e-30 135.2 170 52.9
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 1.6e-27 126.7 132 56.1
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.8e-27 125.9 164 51.2
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 1.5e-25 120.2 173 50.9
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 3.4e-25 119.0 123 57.7
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 4.5e-25 118.6 159 54.7
Glyma.07G097400 Glycine max HOM05D003094 ORTHO05D003482 9.9e-25 117.5 146 54.1
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 2.2e-24 116.3 152 53.3
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.9e-23 113.2 125 58.4
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.9e-23 113.2 125 58.4
TPR.G25985 Trifolium pratense HOM05D003094 ORTHO05D003482 1.8e-21 106.7 96 59.4
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 9.6e-12 74.3 161 38.5
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.6e-11 73.6 182 35.7
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 4.8e-11 72.0 167 37.7
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 8.1e-11 71.2 136 39.7
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.4e-10 70.5 166 39.8
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-10 70.1 168 36.9
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.4e-10 69.7 165 38.2
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 2.4e-10 69.7 180 36.1
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 2.4e-10 69.7 149 40.3
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 3.1e-10 69.3 153 35.9
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.1e-10 69.3 168 36.9
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 5.3e-10 68.6 155 38.1
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.9e-10 68.2 168 35.7
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.0e-10 67.8 168 35.7
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 9.0e-10 67.8 167 37.1
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-09 67.0 168 36.9
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.5e-09 67.0 132 36.4
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 1.5e-09 67.0 101 45.5
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 2.6e-09 66.2 152 36.2
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 4.5e-09 65.5 169 39.1
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 4.5e-09 65.5 177 34.5
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 4.5e-09 65.5 171 36.3
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 5.8e-09 65.1 152 36.8
Lalb_Chr22g0353211 Lupinus albus HOM05D003094 ORTHO05D003482 5.8e-09 65.1 38 84.2
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 5.8e-09 65.1 140 40.7
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.6e-09 64.7 125 38.4
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 7.6e-09 64.7 149 37.6
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.0e-08 64.3 162 38.9
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 1.3e-08 63.9 167 35.9
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.7e-08 63.5 162 38.9
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.7e-08 63.5 163 35.6
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.2e-08 63.2 158 37.3
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 2.9e-08 62.8 167 35.9
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 3.8e-08 62.4 190 34.2
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 4.9e-08 62.0 163 36.8
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 4.9e-08 62.0 164 35.4
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 4.9e-08 62.0 165 35.2
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 6.5e-08 61.6 170 34.7
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 6.5e-08 61.6 160 35.6
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 6.5e-08 61.6 147 36.7
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 8.4e-08 61.2 114 41.2
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 8.4e-08 61.2 114 41.2
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 8.4e-08 61.2 174 35.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.1e-07 60.8 189 34.9
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-07 60.8 82 46.3
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-07 60.8 168 33.9
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.4e-07 60.5 167 32.9
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.4e-07 60.5 164 31.1
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 1.9e-07 60.1 146 34.2
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 2.5e-07 59.7 118 31.4
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 3.2e-07 59.3 170 35.3
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 3.2e-07 59.3 171 35.1
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 3.2e-07 59.3 147 35.4
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.2e-07 59.3 82 45.1
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 3.2e-07 59.3 169 35.5
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 4.2e-07 58.9 166 36.7
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.2e-07 58.9 116 37.1
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 4.2e-07 58.9 192 33.9
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 4.2e-07 58.9 159 35.8
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 4.2e-07 58.9 167 34.7
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.5e-07 58.5 123 36.6
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 5.5e-07 58.5 152 33.6
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 7.1e-07 58.2 165 38.2
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.1e-07 58.2 139 36.0
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 7.1e-07 58.2 166 34.9
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 9.3e-07 57.8 139 36.7
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 9.3e-07 57.8 167 35.9
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.2e-06 57.4 137 35.8
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.2e-06 57.4 158 34.2
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.6e-06 57.0 106 43.4
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-06 57.0 129 37.2
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-06 56.6 128 37.5
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 2.7e-06 56.2 167 35.9
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 2.7e-06 56.2 158 33.5
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 2.7e-06 56.2 122 39.3
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 3.5e-06 55.8 130 32.3
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 3.5e-06 55.8 169 34.3
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 3.5e-06 55.8 165 34.5
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 4.6e-06 55.5 125 39.2
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.6e-06 55.5 95 43.2
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 6.0e-06 55.1 190 33.2
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 6.0e-06 55.1 142 33.1
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.9e-06 54.7 181 35.4
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 7.9e-06 54.7 165 32.1
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 7.9e-06 54.7 159 34.0


User provided reference genes

Program Settings