Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 4.1e-20 100.5 54 100.0
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 2.8e-13 77.8 54 75.9
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 2.0e-11 71.6 54 72.2
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-10 68.2 53 66.0
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-10 68.2 53 66.0
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 2.3e-10 68.2 53 66.0
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 2.3e-10 68.2 53 66.0
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 2.9e-10 67.8 53 66.0
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 5.0e-10 67.0 53 64.2
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 5.0e-10 67.0 53 64.2
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 6.6e-10 66.6 53 64.2
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 8.6e-10 66.2 51 68.6
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 8.6e-10 66.2 53 62.3
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.9e-09 65.1 53 60.4
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 1.9e-09 65.1 53 60.4
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 1.9e-09 65.1 47 70.2
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 3.3e-09 64.3 54 61.1
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 4.3e-09 63.9 53 60.4
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 4.3e-09 63.9 53 60.4
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 5.6e-09 63.5 53 60.4
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 5.6e-09 63.5 53 60.4
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 5.6e-09 63.5 53 58.5
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.6e-09 63.5 54 61.1
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.6e-09 63.5 54 61.1
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 5.6e-09 63.5 54 61.1
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 7.3e-09 63.2 53 58.5
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 7.3e-09 63.2 53 58.5
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 7.3e-09 63.2 53 60.4
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 9.5e-09 62.8 53 58.5
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 9.5e-09 62.8 53 60.4
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 9.5e-09 62.8 53 60.4
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 9.5e-09 62.8 54 63.0
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.2e-08 62.4 54 61.1
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 2.1e-08 61.6 48 68.8
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 2.1e-08 61.6 52 61.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 3.6e-08 60.8 54 59.3
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 4.7e-08 60.5 53 58.5
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 8.0e-08 59.7 54 59.3
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 8.0e-08 59.7 54 59.3
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.0e-07 59.3 52 55.8
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.4e-07 58.9 51 60.8
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.4e-07 58.9 51 58.8
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.8e-07 58.5 54 55.6
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.8e-07 58.5 54 59.3
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.8e-07 58.5 54 63.0
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.8e-07 58.5 54 63.0
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 4.0e-07 57.4 54 57.4
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 4.0e-07 57.4 54 55.6
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 6.8e-07 56.6 51 51.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 6.8e-07 56.6 51 51.0
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 6.8e-07 56.6 54 57.4
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.8e-07 56.6 54 61.1
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 6.8e-07 56.6 50 54.0
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.2e-06 55.8 54 55.6
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.2e-06 55.8 54 50.0
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 2.0e-06 55.1 54 53.7
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 5.8e-06 53.5 48 52.1
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 7.5e-06 53.1 49 57.1
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.5e-06 53.1 49 57.1
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.5e-06 53.1 49 57.1


User provided reference genes

Program Settings