Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.1e-259 899.4 447 100.0
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.3e-217 758.8 477 81.8
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 8.2e-207 723.8 477 78.6
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 6.9e-206 720.7 477 78.2
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 4.5e-205 718.0 477 78.2
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.0e-204 716.8 477 78.0
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 8.5e-204 713.8 477 77.1
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.6e-202 708.4 482 76.6
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.4e-201 706.4 477 77.6
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-194 681.8 484 71.9
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 4.7e-194 681.4 482 73.2
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 5.2e-193 677.9 495 70.3
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-192 676.0 484 71.3
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.6e-189 666.4 481 73.2
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 8.5e-188 660.6 517 67.1
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 7.2e-187 657.5 480 70.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 7.2e-187 657.5 480 70.2
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.6e-186 655.2 481 68.8
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.4e-182 643.3 481 68.2
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.4e-182 643.3 508 65.6
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.6e-181 639.8 481 67.2
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 2.9e-180 635.6 483 66.5
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.9e-179 632.9 481 66.5
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.7e-178 629.0 481 65.9
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.0e-177 625.5 492 66.1
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 5.2e-177 624.8 481 65.3
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.2e-176 623.6 434 75.1
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.5e-176 623.2 479 65.6
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 5.7e-176 621.3 481 65.9
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 9.8e-176 620.5 481 65.7
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.7e-175 619.8 481 65.7
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.2e-175 619.4 479 66.0
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 8.3e-175 617.5 480 64.6
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.1e-174 617.1 481 65.3
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 2.4e-174 615.9 481 64.9
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 3.1e-174 615.5 482 66.8
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 2.0e-173 612.8 482 65.6
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.0e-173 612.8 484 63.6
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 5.9e-173 611.3 485 65.4
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.3e-172 610.1 480 66.5
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 6.6e-172 607.8 477 65.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 3.3e-171 605.5 479 64.5
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.3e-171 605.5 487 64.3
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 7.2e-171 604.4 481 64.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.8e-169 599.7 484 64.3
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.0e-169 598.6 477 63.7
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.9e-169 597.4 485 63.9
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.2e-168 597.0 486 63.8
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.2e-168 597.0 479 64.1
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.2e-168 597.0 485 63.9
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.2e-168 597.0 482 62.0
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.5e-168 596.7 479 64.1
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 9.8e-168 594.0 494 62.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.8e-167 592.4 483 64.4
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 8.3e-167 590.9 487 62.0
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 8.3e-167 590.9 482 63.3
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.1e-166 590.5 485 63.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.1e-166 590.5 482 63.1
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.4e-166 590.1 483 63.4
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 4.1e-166 588.6 477 63.1
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.6e-165 586.6 485 62.7
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.6e-165 586.6 483 61.9
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 2.7e-165 585.9 481 62.8
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.5e-165 585.5 483 62.3
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 3.5e-165 585.5 477 62.3
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 5.9e-165 584.7 477 62.9
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.0e-164 583.9 482 62.2
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.7e-164 583.2 477 62.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.7e-164 583.2 485 62.9
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.6e-164 580.9 482 62.2
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 8.6e-164 580.9 468 63.5
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.3e-163 578.6 484 62.2
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.2e-162 577.0 477 62.3
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 3.6e-162 575.5 477 61.6
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 4.7e-162 575.1 482 61.8
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.4e-161 573.5 483 61.7
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.8e-161 573.2 482 61.4
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.1e-161 572.4 486 61.1
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 8.9e-161 570.9 488 60.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 4.4e-160 568.5 483 61.3
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 9.8e-160 567.4 482 61.4
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.2e-159 566.2 483 61.1
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.9e-159 565.8 483 60.7
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 2.9e-159 565.8 487 60.4
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 4.9e-159 565.1 477 62.7
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 6.4e-159 564.7 483 61.3
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.1e-158 563.9 497 59.4
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.1e-158 562.0 509 57.8
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 4.1e-158 562.0 436 64.0
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 5.4e-158 561.6 483 60.9
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.2e-157 560.5 483 61.1
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.2e-157 560.5 477 60.4
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 6.0e-157 558.1 488 59.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.0e-156 557.4 483 60.9
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.0e-156 557.4 483 60.9
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.7e-156 556.6 417 66.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.9e-155 553.1 572 52.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 2.5e-155 552.7 463 62.2
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.1e-154 549.7 500 58.0
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.8e-154 549.3 507 58.2
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 6.2e-154 548.1 483 59.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.4e-153 547.0 480 57.7
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.3e-153 546.2 482 57.5
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.0e-152 543.1 481 57.0
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 6.2e-146 521.5 467 59.7
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 5.2e-145 518.5 520 55.2
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 6.4e-143 511.5 432 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.3e-140 503.1 488 53.7
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.3e-140 503.1 482 54.4
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.0e-140 502.7 417 62.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 9.9e-136 487.6 561 51.2
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 7.1e-134 481.5 491 51.7
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.7e-132 476.9 475 52.0
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 3.9e-132 475.7 483 53.4
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.6e-130 470.3 425 60.0
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 8.1e-122 441.4 414 57.0
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.1e-121 441.0 448 53.8
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.3e-114 417.5 345 62.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.7e-109 399.8 499 47.3
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 8.5e-87 325.1 256 63.3
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.4e-76 291.2 602 33.7
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 1.8e-73 280.8 527 38.3
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 7.2e-70 268.9 253 56.9
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.6e-69 267.7 223 57.8
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 7.7e-64 248.8 184 61.4
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.5e-62 243.8 252 50.8
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.4e-60 238.0 546 32.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 8.8e-60 235.3 211 62.1
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.8e-57 227.6 184 58.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 3.8e-55 219.9 261 47.5
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 8.6e-47 192.2 181 60.8
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 3.3e-46 190.3 481 31.2
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 8.0e-45 185.7 383 36.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 3.4e-43 180.3 433 33.5
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 6.0e-40 169.5 172 51.2
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 9.5e-38 162.2 212 47.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.1e-32 144.4 343 32.1
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.5e-30 138.3 370 28.4
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.8e-29 134.0 207 39.1
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.0e-28 130.2 378 26.2
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.3e-18 98.6 62 82.3
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.4e-17 95.1 135 40.0
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.5e-16 90.5 65 73.8
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-15 89.0 63 68.3
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.3e-14 83.6 65 66.2
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-13 80.9 161 38.5
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-12 77.0 258 25.6
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-10 71.2 70 52.9
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 2.1e-08 64.7 69 50.7
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 7.9e-08 62.8 68 50.0


User provided reference genes

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