Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 7.3e-209 730.3 374 100.0
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 7.2e-172 607.4 368 85.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.2e-166 590.1 378 81.7
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.5e-166 589.7 367 83.1
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.0e-166 589.3 373 81.2
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.1e-164 583.6 371 81.9
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.7e-160 569.7 372 80.1
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 6.3e-160 567.8 365 79.7
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.8e-152 541.6 373 75.6
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.2e-148 528.5 380 74.5
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.2e-147 526.9 380 74.5
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.3e-144 516.9 381 70.6
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 4.8e-144 515.0 382 70.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.8e-143 513.1 374 71.4
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.7e-142 509.2 370 71.4
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 7.7e-142 507.7 320 78.1
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 7.7e-142 507.7 299 81.6
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.2e-141 506.1 299 81.6
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 5.0e-141 505.0 367 71.1
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 8.5e-141 504.2 328 75.9
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 8.5e-141 504.2 352 73.9
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 8.5e-141 504.2 377 70.3
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.5e-140 503.4 370 70.0
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 2.5e-140 502.7 345 73.9
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.2e-140 501.9 376 68.9
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.2e-139 500.4 376 68.6
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.2e-139 500.4 362 72.7
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 6.1e-139 498.0 334 74.6
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.0e-138 495.4 298 79.5
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 5.2e-138 495.0 363 70.2
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.2e-137 493.8 371 69.0
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.2e-137 493.8 308 77.6
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 5.7e-137 491.5 362 69.1
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 7.5e-137 491.1 367 70.0
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 9.8e-137 490.7 320 75.6
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.2e-136 489.6 302 79.1
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.8e-136 489.2 377 67.1
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 8.3e-136 487.6 317 74.8
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.4e-135 486.9 305 75.4
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.1e-135 485.3 383 65.8
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.2e-134 483.8 321 72.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.0e-134 483.0 374 67.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 3.5e-134 482.3 317 74.1
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 7.7e-134 481.1 363 69.7
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.0e-133 480.7 321 72.6
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.7e-133 479.9 362 66.3
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.3e-133 479.6 286 81.5
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 6.6e-133 478.0 362 67.1
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 6.6e-133 478.0 346 68.8
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.1e-132 477.2 321 72.3
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 5.5e-132 474.9 369 65.0
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.5e-132 474.9 363 67.2
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.2e-131 473.8 363 66.7
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.1e-131 473.0 366 68.6
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 3.6e-131 472.2 385 64.4
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.0e-131 471.1 363 67.2
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-130 470.3 372 64.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.0e-130 469.2 324 71.6
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 4.0e-130 468.8 335 69.9
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.2e-129 467.2 324 71.6
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 2.0e-129 466.5 347 68.6
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.4e-129 465.7 316 70.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 3.4e-129 465.7 298 75.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.4e-129 465.3 298 75.8
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.7e-129 464.9 364 65.1
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 9.8e-129 464.2 375 67.2
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.2e-128 463.0 341 71.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.8e-128 462.6 353 66.9
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 6.3e-128 461.5 311 72.0
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 6.3e-128 461.5 311 72.0
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 6.3e-128 461.5 316 70.9
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-127 460.7 362 64.4
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.1e-127 460.7 333 68.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.1e-127 460.7 376 65.2
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.4e-127 460.3 371 67.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.1e-127 459.1 369 65.0
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 3.1e-127 459.1 371 65.8
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 3.5e-126 455.7 304 73.7
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 6.6e-125 451.4 356 66.6
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 4.3e-124 448.7 377 61.8
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 8.0e-123 444.5 353 63.2
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 4.0e-122 442.2 327 65.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 6.8e-122 441.4 376 60.4
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 9.8e-121 437.6 317 68.5
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 3.7e-120 435.6 366 63.1
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 5.4e-119 431.8 310 69.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 2.0e-118 429.9 362 60.2
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 2.7e-118 429.5 306 67.0
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-116 422.9 344 62.5
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.2e-114 415.2 248 81.5
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 7.5e-113 411.4 372 59.9
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.7e-112 410.2 274 72.3
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.7e-112 410.2 274 72.3
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.6e-110 403.7 343 58.9
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.8e-107 392.9 372 58.1
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.2e-99 367.5 219 79.9
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.1e-98 364.4 280 61.8
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.1e-98 364.4 295 63.4
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.8e-98 363.6 301 63.5
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 9.9e-97 357.8 314 57.6
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.9e-95 353.6 308 57.8
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.0e-93 347.8 296 55.4
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-93 347.4 300 53.7
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-92 344.4 319 52.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.5e-92 344.0 294 63.6
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-92 342.8 296 54.7
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 7.3e-92 341.7 291 54.0
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-91 340.1 300 53.0
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 6.2e-91 338.6 300 52.7
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 6.2e-91 338.6 289 58.5
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.1e-90 336.3 300 52.3
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 5.3e-90 335.5 378 56.1
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-89 334.0 300 53.0
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-89 333.6 300 53.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.6e-89 333.2 299 54.2
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.4e-89 332.4 300 53.7
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-89 332.0 300 54.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 5.8e-89 332.0 300 54.3
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 7.6e-89 331.6 290 54.1
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-88 330.9 300 52.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.7e-88 330.5 300 53.3
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.2e-88 330.1 300 54.7
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 2.9e-88 329.7 308 52.3
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.8e-88 329.3 300 54.0
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 3.8e-88 329.3 300 53.7
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.9e-88 328.9 300 52.3
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 8.4e-88 328.2 299 51.5
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.4e-87 327.4 298 53.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.9e-87 327.0 310 52.6
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.4e-87 326.6 298 52.7
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.4e-87 326.6 304 52.3
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 7.1e-87 325.1 301 53.2
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.2e-86 324.3 298 51.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.5e-86 322.8 300 52.3
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.8e-86 321.6 298 53.0
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.0e-85 321.2 301 51.5
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.9e-85 319.3 300 52.0
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-84 315.5 272 54.0
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 9.6e-84 314.7 301 50.5
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.4e-82 310.1 300 51.3
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-81 307.0 267 54.7
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.6e-81 306.6 294 49.0
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-78 297.7 299 48.5
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.8e-75 286.6 301 49.8
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 9.0e-74 281.6 287 49.5
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 8.4e-72 275.0 280 49.6
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 8.4e-72 275.0 237 63.3
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-69 268.1 349 40.1
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.8e-67 260.0 244 52.9
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 2.5e-55 220.3 298 41.3
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-55 219.9 198 53.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 3.2e-55 219.9 198 53.5
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 7.2e-55 218.8 189 60.8
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-54 218.0 219 49.3
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 6.7e-53 212.2 252 48.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.4e-47 194.5 323 35.9
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 7.2e-39 165.6 127 54.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-37 161.8 296 34.1
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-37 161.0 127 53.5
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-37 161.0 127 53.5
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.9e-37 159.8 146 52.1
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.5e-31 141.4 81 85.2
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-31 140.6 110 52.7
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-29 134.4 154 48.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.9e-23 114.4 94 64.9
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 2.0e-20 104.4 298 27.9
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 8.9e-13 79.0 57 68.4


User provided reference genes

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