Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 5.5e-65 250.8 120 100.0
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 2.6e-35 152.1 121 62.0
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 2.6e-35 152.1 121 62.0
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 4.2e-33 144.8 121 59.5
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 4.2e-33 144.8 120 55.0
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 5.5e-33 144.4 123 60.2
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.0e-31 140.2 121 57.0
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 2.3e-31 139.0 123 58.5
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 2.3e-31 139.0 121 58.7
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 2.3e-31 139.0 120 54.2
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 3.9e-31 138.3 124 54.8
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 8.8e-31 137.1 124 52.4
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 8.8e-31 137.1 120 53.3
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.1e-30 136.7 121 57.0
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.5e-30 136.3 120 57.5
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.6e-30 135.6 122 56.6
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 4.4e-30 134.8 122 56.6
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 5.7e-30 134.4 121 57.9
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 5.7e-30 134.4 122 57.4
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 7.4e-30 134.0 121 54.5
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 9.7e-30 133.7 126 55.6
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 9.7e-30 133.7 120 55.0
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.3e-29 133.3 121 57.9
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.7e-29 132.9 121 56.2
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.7e-29 132.9 128 55.5
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.2e-29 132.5 120 54.2
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 2.2e-29 132.5 123 53.7
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 6.3e-29 131.0 123 55.3
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 6.3e-29 131.0 120 55.0
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 1.1e-28 130.2 124 53.2
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.1e-28 130.2 121 56.2
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.1e-28 130.2 124 51.6
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 1.4e-28 129.8 122 54.9
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 2.4e-28 129.0 122 52.5
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 3.1e-28 128.6 121 55.4
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 3.1e-28 128.6 120 54.2
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 4.1e-28 128.3 120 52.5
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 5.3e-28 127.9 120 50.8
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 7.0e-28 127.5 123 54.5
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 7.0e-28 127.5 120 53.3
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 7.0e-28 127.5 123 52.8
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 9.1e-28 127.1 121 57.0
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 9.1e-28 127.1 121 52.1
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.2e-27 126.7 123 52.8
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.2e-27 126.7 124 51.6
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.6e-27 126.3 120 53.3
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.6e-27 126.3 127 50.4
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.6e-27 126.3 120 50.8
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.6e-27 126.3 120 50.0
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.0e-27 125.9 126 52.4
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.0e-27 125.9 121 55.4
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.0e-27 125.9 121 55.4
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 2.6e-27 125.6 119 51.3
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 2.6e-27 125.6 122 53.3
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 3.5e-27 125.2 120 52.5
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 4.5e-27 124.8 121 55.4
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 5.9e-27 124.4 120 53.3
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.9e-27 124.4 121 55.4
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.9e-27 124.4 120 50.0
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 7.7e-27 124.0 127 52.0
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 7.7e-27 124.0 120 54.2
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.3e-26 123.2 125 52.0
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 1.3e-26 123.2 120 51.7
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.7e-26 122.9 127 51.2
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 3.8e-26 121.7 127 51.2
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 5.0e-26 121.3 122 48.4
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 5.0e-26 121.3 125 52.8
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.5e-26 120.9 126 53.2
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 6.5e-26 120.9 125 49.6
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 1.1e-25 120.2 120 54.2
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.1e-25 120.2 122 54.1
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.5e-25 119.8 122 51.6
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.5e-25 119.8 131 48.1
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.2e-25 118.6 135 45.9
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 4.2e-25 118.2 124 49.2
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 4.2e-25 118.2 120 48.3
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 4.2e-25 118.2 120 49.2
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 5.5e-25 117.9 120 50.8
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 5.5e-25 117.9 123 50.4
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 7.2e-25 117.5 124 50.0
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 9.4e-25 117.1 121 49.6
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 1.6e-24 116.3 121 47.9
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 8.0e-24 114.0 128 48.4
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.0e-23 113.6 123 49.6
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 2.3e-23 112.5 120 49.2
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 3.0e-23 112.1 124 47.6
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 3.0e-23 112.1 120 49.2
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 6.7e-23 110.9 119 46.2
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 6.7e-23 110.9 122 48.4
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 6.7e-23 110.9 121 46.3
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 4.4e-22 108.2 123 48.8
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.7e-22 107.8 121 47.1
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.4e-20 102.4 121 49.6
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 7.0e-20 100.9 123 47.2
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.2e-19 100.1 126 44.4
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 2.0e-19 99.4 129 42.6
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.5e-19 98.2 121 41.3
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.5e-19 98.2 121 41.3
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.9e-19 97.8 128 43.0
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.0e-18 97.1 118 47.5
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.0e-18 97.1 128 42.2
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 1.3e-18 96.7 123 46.3
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.7e-18 96.3 124 39.5
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.2e-18 95.9 119 46.2
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 6.5e-18 94.4 118 45.8
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-17 93.6 118 45.8
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.9e-17 92.8 118 45.8
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 7.2e-17 90.9 120 45.0
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 7.2e-17 90.9 119 44.5
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 9.4e-17 90.5 118 44.9
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 9.4e-17 90.5 118 44.9
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 9.4e-17 90.5 119 41.2
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.6e-16 89.7 119 41.2
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.6e-16 89.7 118 44.9
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.6e-16 89.7 120 44.2
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 2.1e-16 89.4 118 44.1
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 2.1e-16 89.4 118 44.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 2.7e-16 89.0 118 46.6
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.6e-16 88.6 119 41.2
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.6e-16 88.6 118 44.1
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 4.7e-16 88.2 118 44.1
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 6.1e-16 87.8 119 41.2
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.0e-15 87.0 129 40.3
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.4e-15 86.7 117 41.9
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 1.8e-15 86.3 121 44.6
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.0e-15 85.1 119 42.0
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 5.2e-15 84.7 93 45.2
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 6.8e-15 84.3 123 44.7
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.5e-14 83.2 121 43.0
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.2e-13 79.3 74 58.1
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.8e-13 79.0 118 39.8
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.1e-12 77.0 114 38.6
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 5.4e-12 74.7 137 38.0
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.7e-11 72.4 121 38.0
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 5.9e-11 71.2 96 43.8
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 8.0e-08 60.8 74 41.9
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 8.0e-08 60.8 74 41.9
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.4e-07 60.1 145 32.4


User provided reference genes

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