Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.1e-96 356.7 184 100.0
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 4.7e-76 288.1 184 76.1
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 5.2e-75 284.6 184 74.5
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.2e-74 283.5 184 73.4
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 3.7e-73 278.5 184 73.9
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 8.3e-73 277.3 180 74.4
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 4.1e-72 275.0 183 73.8
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 5.4e-72 274.6 183 75.4
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 7.1e-72 274.2 184 71.7
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.2e-71 273.5 183 73.2
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.7e-71 272.3 184 73.9
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 6.0e-71 271.2 183 73.8
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 7.8e-71 270.8 181 72.9
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 1.0e-70 270.4 183 70.5
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 1.3e-70 270.0 184 71.2
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 1.3e-70 270.0 181 72.4
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.7e-70 269.6 182 72.0
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 1.7e-70 269.6 184 71.7
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 2.3e-70 269.2 179 73.7
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 3.9e-70 268.5 185 74.1
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.9e-70 268.5 180 71.1
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 3.9e-70 268.5 180 71.1
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 5.1e-70 268.1 178 73.6
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 6.6e-70 267.7 185 71.9
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 8.6e-70 267.3 185 73.5
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.5e-69 266.5 182 70.9
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 1.5e-69 266.5 185 70.3
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 1.9e-69 266.2 182 70.9
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.9e-69 266.2 184 69.0
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 3.3e-69 265.4 178 72.5
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 7.3e-69 264.2 181 70.7
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 9.6e-69 263.8 183 71.6
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 1.6e-68 263.1 184 69.0
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.6e-68 263.1 184 69.0
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.1e-68 262.7 182 69.2
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 2.8e-68 262.3 178 72.5
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 2.8e-68 262.3 178 72.5
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 3.6e-68 261.9 182 70.3
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.6e-68 261.9 179 69.8
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 4.7e-68 261.5 182 70.3
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 4.7e-68 261.5 184 69.0
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 6.2e-68 261.2 182 68.7
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 6.2e-68 261.2 180 71.7
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 8.1e-68 260.8 184 68.5
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.1e-67 260.4 180 70.6
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 1.4e-67 260.0 184 68.5
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 1.4e-67 260.0 184 68.5
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.4e-67 260.0 180 71.7
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 1.4e-67 260.0 182 70.9
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.8e-67 259.6 181 69.1
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 3.1e-67 258.8 183 67.8
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 5.2e-67 258.1 181 69.6
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 6.8e-67 257.7 182 69.2
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 6.8e-67 257.7 184 69.0
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 8.9e-67 257.3 182 69.8
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 8.9e-67 257.3 181 66.9
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 1.2e-66 256.9 184 67.9
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 1.2e-66 256.9 184 67.9
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 1.2e-66 256.9 184 67.9
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 1.2e-66 256.9 180 70.0
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 1.2e-66 256.9 179 68.7
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.5e-66 256.5 182 68.7
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.5e-66 256.5 183 68.9
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 2.0e-66 256.1 181 69.1
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 2.6e-66 255.8 182 68.1
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 3.4e-66 255.4 183 67.8
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 3.4e-66 255.4 181 68.5
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 5.8e-66 254.6 184 66.8
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.7e-65 253.1 180 68.9
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.2e-65 252.7 181 66.3
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.9e-65 252.3 181 65.7
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 4.9e-65 251.5 180 66.1
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 8.4e-65 250.8 180 70.6
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 1.1e-64 250.4 179 67.6
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 4.2e-64 248.4 179 69.8
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 1.6e-63 246.5 177 67.2
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 2.1e-63 246.1 180 66.1
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 2.1e-63 246.1 177 67.2
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 6.0e-63 244.6 184 64.7
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.0e-62 243.8 182 65.4
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.3e-62 243.4 182 64.8
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.3e-62 242.7 179 67.6
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 3.9e-62 241.9 182 61.0
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.9e-62 241.9 184 63.6
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 5.1e-62 241.5 183 63.9
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 8.7e-62 240.7 184 64.7
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 3.3e-61 238.8 176 64.8
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 4.3e-61 238.4 164 71.3
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 4.8e-60 235.0 168 66.7
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 1.4e-59 233.4 179 63.7
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.4e-59 232.6 179 63.7
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 3.1e-59 232.3 183 62.3
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 5.3e-59 231.5 182 62.6
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 6.9e-59 231.1 180 63.3
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.3e-57 226.9 172 64.5
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 2.7e-55 219.2 178 62.4
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 2.7e-55 219.2 189 58.7
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 4.6e-55 218.4 180 58.9
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.5e-53 212.6 184 57.1
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 7.3e-53 211.1 137 76.6
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.8e-51 206.5 202 52.0
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-50 203.4 201 51.2
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.1e-48 197.2 194 51.5
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 8.7e-46 187.6 175 56.0
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 6.2e-44 181.4 158 60.1
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 4.0e-43 178.7 158 58.2
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.3e-41 173.7 141 61.7
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 2.7e-39 166.0 106 74.5
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 9.6e-37 157.5 116 66.4
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 5.8e-34 148.3 182 43.4
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.9e-33 146.0 180 45.0
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.4e-32 143.7 106 67.0
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 1.4e-32 143.7 188 40.4
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 7.9e-31 137.9 189 42.3
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.8e-30 136.7 175 41.7
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 2.3e-30 136.3 173 42.2
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.1e-29 134.0 86 72.1
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 9.7e-29 131.0 181 40.3
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 5.9e-26 121.7 169 39.1
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 8.5e-25 117.9 179 42.5
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.6e-23 112.1 95 54.7
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 7.7e-18 94.7 105 49.5
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.4e-16 90.5 84 54.8
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 2.6e-10 69.7 69 49.3
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 1.1e-08 64.3 188 26.1
Os05g0482501 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 3.2e-08 62.8 133 32.3
Ciclev10009328m.g Citrus clementina HOM05D003111 ORTHO05D003502 3.6e-07 59.3 164 26.2
Lj7A649T23 Lonicera japonica HOM05D003111 ORTHO05D003502 6.7e-06 55.1 142 26.8


User provided reference genes

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