Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P866T8 Lonicera japonica HOM05D003039 ORTHO05D019456 5.8e-53 211.1 146 100.0
VMungo1383G3318 Vigna mungo HOM05D000855 ORTHO05D019456 2.5e-19 99.4 119 46.2
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 3.5e-13 79.0 102 47.1
DCAR_017780 Daucus carota HOM05D003039 ORTHO05D009478 3.2e-11 72.4 40 77.5
CsaV3_3G031700 Cucumis sativus L. HOM05D003039 ORTHO05D009478 4.2e-11 72.0 41 75.6
Aqoxy7G03329 Aquilegia oxysepala HOM05D003039 ORTHO05D009478 7.2e-11 71.2 40 75.0
VMungo0647G2013 Vigna mungo HOM05D031014 ORTHO05D019456 9.4e-11 70.9 106 76.4
Thecc.01G320000 Theobroma cacao HOM05D003039 ORTHO05D009478 3.6e-10 68.9 41 68.3
Actinidia25867 Actinidia chinensis HOM05D003039 ORTHO05D009478 4.7e-10 68.6 39 71.8
CDE08G1283 Ceratophyllum demersum HOM05D003039 ORTHO05D009478 8.0e-10 67.8 131 60.3
MELO3C012922.2 Cucumis melo HOM05D003039 ORTHO05D009478 8.0e-10 67.8 40 72.5
Lj2P868T14 Lonicera japonica HOM05D003039 ORTHO05D009478 1.0e-09 67.4 32 93.8
SHI34114 Sapria himalayana HOM05D003039 ORTHO05D009478 1.8e-09 66.6 38 68.4
BcaB01g06135 Brassica carinata HOM05D003039 ORTHO05D009478 2.3e-09 66.2 40 67.5
BolC3t12581H Brassica oleracea HOM05D003039 ORTHO05D009478 2.3e-09 66.2 40 67.5
Ah.10g033630 Amaranthus hybridus HOM05D003039 ORTHO05D009478 4.0e-09 65.5 32 87.5
Cpa.g.sc932.1 Carica papaya HOM05D003039 ORTHO05D009478 4.0e-09 65.5 35 82.9
CDE08G0093 Ceratophyllum demersum HOM05D003039 ORTHO05D009478 4.0e-09 65.5 41 61.0
TAR636G0541 Trochodendron aralioides HOM05D003039 ORTHO05D009478 4.0e-09 65.5 40 65.0
ClCG10G011660 Citrullus lanatus HOM05D003039 ORTHO05D009478 8.8e-09 64.3 35 74.3
TPR.G3049 Trifolium pratense HOM05D003039 ORTHO05D009478 1.2e-08 63.9 34 82.4
BcaB01g06132 Brassica carinata HOM05D003039 ORTHO05D009478 1.5e-08 63.5 41 65.9
Lj2P848T5 Lonicera japonica HOM05D003039 ORTHO05D009478 1.5e-08 63.5 28 100.0
Eucgr.G01125 Eucalyptus grandis HOM05D003039 ORTHO05D009478 2.0e-08 63.2 34 76.5
MD08G1216300 Malus domestica HOM05D003039 ORTHO05D009478 2.0e-08 63.2 32 75.0
Rhsim01G0292600 Rhododendron simsii HOM05D003039 ORTHO05D009478 2.0e-08 63.2 34 76.5
Sed0013624 Sechium edule HOM05D003039 ORTHO05D009478 2.0e-08 63.2 34 73.5
CANSAT80G0566 Cannabis sativa HOM05D003039 ORTHO05D009478 2.6e-08 62.8 32 84.4
Nn2g12694 Nelumbo nucifera HOM05D003039 ORTHO05D009478 2.6e-08 62.8 32 78.1
C03p00150 Brassica napus HOM05D003039 ORTHO05D009478 3.3e-08 62.4 38 71.1
Eucgr.G01126 Eucalyptus grandis HOM05D003039 ORTHO05D009478 3.3e-08 62.4 32 81.2
Dinv36297 Davidia involucrata HOM05D003039 ORTHO05D009478 4.4e-08 62.0 35 71.4
TWI14G0220 Tripterygium wilfordii HOM05D003039 ORTHO05D009478 4.4e-08 62.0 35 71.4
Phvul.011G069000 Phaseolus vulgaris HOM05D003039 ORTHO05D009478 5.7e-08 61.6 34 79.4
MSTRG.18804 Avicennia marina HOM05D003039 ORTHO05D009478 7.5e-08 61.2 34 73.5
Gohir.A11G107600 Gossypium hirsutum HOM05D003039 ORTHO05D009478 9.7e-08 60.8 32 75.0
Gohir.D11G112400 Gossypium hirsutum HOM05D003039 ORTHO05D009478 9.7e-08 60.8 32 75.0
Gorai.007G120700 Gossypium raimondii HOM05D003039 ORTHO05D009478 9.7e-08 60.8 32 75.0
QL12p038622 Quercus lobata HOM05D003039 ORTHO05D009478 9.7e-08 60.8 31 77.4
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 1.3e-07 60.5 143 24.5
HPP92_015243 Vanilla planifolia HOM05D003039 ORTHO05D009478 1.3e-07 60.5 35 68.6
CAN.G439.2 Capsicum annuum HOM05D003039 ORTHO05D009478 1.7e-07 60.1 34 70.6
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 1.7e-07 60.1 143 24.5
CiPaw.07G121100 Carya illinoinensis HOM05D003039 ORTHO05D009478 2.2e-07 59.7 35 68.6
Duzib138G0793 Durio zibethinus HOM05D003039 ORTHO05D009478 2.2e-07 59.7 32 71.9
Glyma.02G009700 Glycine max HOM05D003039 ORTHO05D009478 2.2e-07 59.7 34 76.5
Glyma.10G010250 Glycine max HOM05D003039 ORTHO05D019456 2.2e-07 59.7 41 68.3
Lj5g0022385 Lotus japonicus HOM05D003039 ORTHO05D009478 2.2e-07 59.7 34 73.5
MD14G1187700 Malus domestica HOM05D007383 ORTHO05D009254 2.2e-07 59.7 143 23.8
Medtr1g086500 Medicago truncatula HOM05D003039 ORTHO05D009478 2.2e-07 59.7 32 81.2
Prupe.1G549200 Prunus persica HOM05D003039 ORTHO05D009478 2.2e-07 59.7 34 70.6
Psat6g159720 Pisum sativum HOM05D003039 ORTHO05D009478 2.8e-07 59.3 32 81.2
VMungo1127G0634 Vigna mungo HOM05D003039 ORTHO05D009478 2.8e-07 59.3 32 81.2
Migut.D02462 Erythranthe guttata HOM05D003039 ORTHO05D009478 3.7e-07 58.9 32 78.1
Nitab4.5_0008410g0010 Nicotiana tabacum HOM05D003039 ORTHO05D009478 3.7e-07 58.9 32 75.0
Cfa004857 Carpinus fangiana HOM05D003039 ORTHO05D009478 4.8e-07 58.5 32 68.8
Ca_10260_v3 Cicer arietinum L. HOM05D003039 ORTHO05D009478 4.8e-07 58.5 32 78.1
Haze_05093 Corylus avellana HOM05D003039 ORTHO05D009478 4.8e-07 58.5 32 68.8
AL1G11782 Arabidopsis lyrata HOM05D003039 ORTHO05D009478 6.3e-07 58.2 34 73.5
AT1G02420 Arabidopsis thaliana HOM05D003039 ORTHO05D009478 6.3e-07 58.2 34 73.5
Cc01_g08170 Coffea canephora HOM05D003039 ORTHO05D009478 6.3e-07 58.2 31 71.0
Nitab4.5_0009560g0010 Nicotiana tabacum HOM05D003039 ORTHO05D009478 6.3e-07 58.2 32 75.0
Oeu051493.1 Olea europaea HOM05D003039 ORTHO05D009478 6.3e-07 58.2 35 68.6
Carub.0001s0150 Capsella rubella HOM05D003039 ORTHO05D009478 8.2e-07 57.8 34 70.6
Sp1g01510 Schrenkiella parvula HOM05D003039 ORTHO05D009478 8.2e-07 57.8 34 70.6
Sopen11g029340 Solanum pennellii HOM05D003039 ORTHO05D009478 8.2e-07 57.8 34 67.6
FAN08G2236 Fragaria x ananassa HOM05D003039 ORTHO05D009478 1.1e-06 57.4 34 67.6
MBI19_g32692_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D009478 1.1e-06 57.4 35 62.9
SalBow6G4384 Salvia bowleyana HOM05D003039 ORTHO05D009478 1.1e-06 57.4 32 68.8
CARHR001750 Cardamine hirsuta HOM05D003039 ORTHO05D009478 1.8e-06 56.6 32 75.0
FvH4_5g32610 Fragaria vesca HOM05D003039 ORTHO05D009478 1.8e-06 56.6 32 71.9
FAN18G3877 Fragaria x ananassa HOM05D003039 ORTHO05D009478 1.8e-06 56.6 32 71.9
Solyc11g071670.2 Solanum lycopersicum HOM05D003039 ORTHO05D009478 1.8e-06 56.6 34 64.7
Aqoxy3G04284 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 3.1e-06 55.8 145 25.5
Peaxi162Scf00217g00003 Petunia axillaris HOM05D003039 ORTHO05D009478 3.1e-06 55.8 32 68.8
Potri.007G079400 Populus trichocarpa HOM05D003039 ORTHO05D009478 3.1e-06 55.8 36 63.9
ATR0693G157 Amborella trichopoda HOM05D003039 ORTHO05D009478 4.1e-06 55.5 41 53.7
Ciclev10019795m.g Citrus clementina HOM05D003039 ORTHO05D009478 4.1e-06 55.5 28 75.0
PGSC0003DMG400003011 Solanum tuberosum HOM05D003039 ORTHO05D009478 5.3e-06 55.1 32 68.8
A08p37670 Brassica napus HOM05D003039 ORTHO05D009478 7.0e-06 54.7 36 61.1
BraA08t35663Z Brassica rapa HOM05D003039 ORTHO05D009478 7.0e-06 54.7 36 61.1
PGR031G3850 Punica granatum HOM05D003039 ORTHO05D009478 7.0e-06 54.7 31 71.0
RcHm_v2.0_Chr7g0230241 Rosa chinensis HOM05D003039 ORTHO05D009478 7.0e-06 54.7 32 68.8
Sabra07G0066600 Salix brachista HOM05D003039 ORTHO05D009478 7.0e-06 54.7 34 64.7
BcaB03g13512 Brassica carinata HOM05D003039 ORTHO05D009478 9.1e-06 54.3 34 64.7
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 9.1e-06 54.3 147 23.8
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 9.1e-06 54.3 147 23.8
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 9.1e-06 54.3 147 23.8
SGA_v2.0_scaffold7G04017 Striga asiatica HOM05D003039 ORTHO05D009478 9.1e-06 54.3 32 65.6


User provided reference genes

Program Settings