Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P811T4 Lonicera japonica HOM05D007713 ORTHO05D009748 1.8e-150 535.8 256 100.0
Hma1.2p1_0811F.1_g222080 Hydrangea macrophylla HOM05D007713 ORTHO05D009748 3.6e-114 415.2 259 74.9
Manes.02G135500 Manihot esculenta HOM05D007713 ORTHO05D009748 5.7e-112 407.9 260 75.4
Nitab4.5_0002567g0140 Nicotiana tabacum HOM05D007713 ORTHO05D009748 2.2e-111 406.0 258 77.5
Nitab4.5_0002161g0070 Nicotiana tabacum HOM05D007713 ORTHO05D009748 3.7e-111 405.2 258 77.1
TAR633G2062 Trochodendron aralioides HOM05D007713 ORTHO05D009748 3.1e-110 402.1 255 73.7
CSS0029086 Camellia sinensis var. sinensis HOM05D007713 ORTHO05D009748 4.1e-110 401.7 257 73.9
Haze_23294 Corylus avellana HOM05D007713 ORTHO05D009748 1.0e-108 397.1 272 70.2
Haze_23299 Corylus avellana HOM05D007713 ORTHO05D009748 1.0e-108 397.1 272 70.2
Dinv24613 Davidia involucrata HOM05D007713 ORTHO05D009748 2.2e-108 396.0 248 76.2
CiPaw.13G147100 Carya illinoinensis HOM05D007713 ORTHO05D009748 8.5e-108 394.0 266 70.3
Cfa009929 Carpinus fangiana HOM05D007713 ORTHO05D009748 1.5e-107 393.3 273 69.6
CiPaw.12G120900 Carya illinoinensis HOM05D007713 ORTHO05D009748 3.2e-107 392.1 265 70.2
Lsat_1_v5_gn_2_31700 Lactuca sativa HOM05D007713 ORTHO05D009748 5.5e-107 391.3 256 73.8
Sopen11g029730 Solanum pennellii HOM05D007713 ORTHO05D009748 7.2e-107 391.0 261 71.3
Cc01_g07320 Coffea canephora HOM05D007713 ORTHO05D009748 1.2e-106 390.2 261 70.9
TAR636G2738 Trochodendron aralioides HOM05D007713 ORTHO05D009748 2.1e-106 389.4 255 71.0
QL01p016194 Quercus lobata HOM05D007713 ORTHO05D009748 8.0e-106 387.5 271 69.4
MBI19_g04340_MAGBIO Magnolia biondii HOM05D007713 ORTHO05D009748 3.0e-105 385.6 255 71.4
Peaxi162Scf00978g00032 Petunia axillaris HOM05D007713 ORTHO05D009748 4.0e-105 385.2 259 71.8
Oeu047953.1 Olea europaea HOM05D007713 ORTHO05D009748 5.7e-104 381.3 256 72.3
Actinidia06981 Actinidia chinensis HOM05D007713 ORTHO05D009748 1.8e-102 376.3 246 72.0
HanXRQChr03g0080051 Helianthus annuus HOM05D007713 ORTHO05D009748 1.8e-102 376.3 255 70.2
PSO765G0028 Papaver somniferum HOM05D007713 ORTHO05D009748 5.3e-102 374.8 267 67.4
TWI31G0070 Tripterygium wilfordii HOM05D007713 ORTHO05D009748 5.3e-102 374.8 257 69.3
SGA_v2.0_scaffold8G04513 Striga asiatica HOM05D007713 ORTHO05D009748 2.0e-101 372.9 261 68.2
Potri.009G066500 Populus trichocarpa HOM05D007713 ORTHO05D009748 3.5e-101 372.1 261 68.2
PSO349G0341 Papaver somniferum HOM05D007713 ORTHO05D009748 2.9e-100 369.0 267 66.7
Potri.001G271900 Populus trichocarpa HOM05D007713 ORTHO05D009748 2.9e-100 369.0 259 68.7
PGSC0003DMG400027417 Solanum tuberosum HOM05D007713 ORTHO05D009748 8.5e-100 367.5 261 69.3
ECA233G2058 Erigeron canadensis HOM05D007713 ORTHO05D009748 1.9e-99 366.3 262 70.6
Thecc.09G252200 Theobroma cacao HOM05D007713 ORTHO05D009748 1.9e-99 366.3 262 67.9
Cpa.g.sc36.103 Carica papaya HOM05D007713 ORTHO05D009748 3.2e-99 365.5 264 67.0
Duzib168G2333 Durio zibethinus HOM05D007713 ORTHO05D009748 3.2e-99 365.5 263 67.7
Lalb_Chr07g0188901 Lupinus albus HOM05D007713 ORTHO05D009748 3.2e-99 365.5 261 69.7
PGR119G2462 Punica granatum HOM05D007713 ORTHO05D009748 5.5e-99 364.8 260 67.3
Sabra16G0167200 Salix brachista HOM05D007713 ORTHO05D009748 7.2e-99 364.4 261 67.4
Thhalv10004305m.g Eutrema salsugineum HOM05D007713 ORTHO05D009748 1.6e-98 363.2 257 70.0
Aqoxy1G02561 Aquilegia oxysepala HOM05D007713 ORTHO05D009748 2.1e-98 362.8 266 65.8
COL.COLO4_33248 Corchorus olitorius HOM05D007713 ORTHO05D009748 2.1e-98 362.8 263 67.3
CsaV3_1G041980 Cucumis sativus L. HOM05D007713 ORTHO05D009748 2.1e-98 362.8 265 64.5
Gohir.D07G123200 Gossypium hirsutum HOM05D007713 ORTHO05D009748 2.1e-98 362.8 265 67.5
MELO3C015613.2 Cucumis melo HOM05D007713 ORTHO05D009748 3.6e-98 362.1 265 64.5
Gorai.001G132900 Gossypium raimondii HOM05D007713 ORTHO05D009748 6.1e-98 361.3 265 67.2
Lj6g0023778 Lotus japonicus HOM05D007713 ORTHO05D009748 6.1e-98 361.3 264 67.0
ClCG03G014250 Citrullus lanatus HOM05D007713 ORTHO05D009748 1.0e-97 360.5 270 63.7
A09p05580 Brassica napus HOM05D007713 ORTHO05D009748 1.4e-97 360.1 258 69.0
BraA09t36199Z Brassica rapa HOM05D007713 ORTHO05D009748 1.4e-97 360.1 258 69.0
EL10Ac4g10074 Beta vulgaris HOM05D007713 ORTHO05D009748 5.2e-97 358.2 253 67.6
BcaC04g23665 Brassica carinata HOM05D007713 ORTHO05D009748 5.2e-97 358.2 258 69.0
C09p06140 Brassica napus HOM05D007713 ORTHO05D009748 5.2e-97 358.2 258 69.0
AUR62006574 Chenopodium quinoa HOM05D007713 ORTHO05D009748 5.2e-97 358.2 254 67.7
BcaB04g19704 Brassica carinata HOM05D007713 ORTHO05D009748 6.8e-97 357.8 258 68.6
Sp2g21080 Schrenkiella parvula HOM05D007713 ORTHO05D009748 8.8e-97 357.5 258 68.6
Sed0009065 Sechium edule HOM05D007713 ORTHO05D009748 1.2e-96 357.1 271 64.6
AUR62000228 Chenopodium quinoa HOM05D007713 ORTHO05D009748 2.6e-96 355.9 253 67.2
BolC9t53535H Brassica oleracea HOM05D007713 ORTHO05D009748 3.4e-96 355.5 258 68.6
Gohir.A07G118900 Gossypium hirsutum HOM05D007713 ORTHO05D009748 4.4e-96 355.1 263 66.5
Aa31LG11G9740 Aethionema arabicum HOM05D007713 ORTHO05D009748 5.7e-96 354.8 258 67.1
Ah.06g194890 Amaranthus hybridus HOM05D007713 ORTHO05D009748 2.2e-95 352.8 253 68.8
Carub.0006s2459 Capsella rubella HOM05D007713 ORTHO05D009748 1.1e-94 350.5 257 66.9
AT5G26960 Arabidopsis thaliana HOM05D007713 ORTHO05D009748 1.4e-94 350.1 257 66.5
AL6G38870 Arabidopsis lyrata HOM05D007713 ORTHO05D009748 1.6e-93 346.7 257 66.5
Rhsim13G0203800 Rhododendron simsii HOM05D007713 ORTHO05D009748 4.5e-93 345.1 259 64.9
CARHR186580 Cardamine hirsuta HOM05D007713 ORTHO05D009748 1.7e-92 343.2 259 65.6
Atru.chr3.2844 Acer truncatum HOM05D007713 ORTHO05D009748 1.6e-90 336.7 259 63.7
Ca_26656_v3 Cicer arietinum L. HOM05D007713 ORTHO05D009748 3.6e-90 335.5 260 64.2
Glyma.20G045100 Glycine max HOM05D007713 ORTHO05D009748 3.7e-87 325.5 268 61.6
Medtr3g045210 Medicago truncatula HOM05D007713 ORTHO05D009748 6.3e-87 324.7 258 60.1
Phvul.006G018200 Phaseolus vulgaris HOM05D007713 ORTHO05D009748 7.0e-86 321.2 259 62.5
TPR.G11930 Trifolium pratense HOM05D007713 ORTHO05D009748 7.0e-86 321.2 263 59.3
Solyc11g072080.1 Solanum lycopersicum HOM05D007713 ORTHO05D009748 5.9e-85 318.2 214 71.0
VMungo0540G1337 Vigna mungo HOM05D007713 ORTHO05D009748 5.9e-85 318.2 254 63.8
Sc16g0010880 Simmondsia chinensis HOM05D007713 ORTHO05D009748 8.9e-73 277.7 241 57.3
Ciclev10015393m.g Citrus clementina HOM05D007713 ORTHO05D009748 1.2e-72 277.3 256 54.3
THA.LOC104805019 Tarenaya hassleriana HOM05D007713 ORTHO05D009748 6.4e-71 271.6 263 54.0
SEGI_24675 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 3.0e-68 262.7 259 48.3
SEGI_20329 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 5.6e-67 258.5 259 47.9
Migut.D00708 Erythranthe guttata HOM05D007713 ORTHO05D009748 2.6e-64 249.6 222 60.8
Os11g0138700 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 9.9e-64 247.7 258 51.9
Os12g0135200 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 9.9e-64 247.7 258 51.9
SMO116G0438 Selaginella moellendorffii HOM05D007713 ORTHO05D009748 5.4e-62 241.9 261 45.2
Mapoly0014s0086 Marchantia polymorpha HOM05D007713 ORTHO05D009748 6.0e-61 238.4 261 45.6
GSVIVG01037395001 Vitis vinifera HOM05D007713 ORTHO05D009748 7.8e-61 238.0 160 70.6
Pp3c12_25210 Physcomitrium patens HOM05D007713 ORTHO05D009748 2.5e-59 233.0 263 44.9
Pp3c4_2880 Physcomitrium patens HOM05D007713 ORTHO05D009748 5.6e-59 231.9 259 45.2
Zm00001eb196340 Zea mays HOM05D007713 ORTHO05D009748 1.8e-57 226.9 259 48.6
CAN.G280.7 Capsicum annuum HOM05D007713 ORTHO05D009748 2.0e-48 196.8 256 45.7
Nn7g36950 Nelumbo nucifera HOM05D007713 ORTHO05D009748 5.6e-43 178.7 128 67.2
ATR0307G040 Amborella trichopoda HOM05D007713 ORTHO05D009748 5.6e-27 125.6 310 26.8
HPP92_018395 Vanilla planifolia HOM05D007713 ORTHO05D009748 1.6e-26 124.0 157 45.9
Mapoly0057s0100 Marchantia polymorpha HOM05D000667 ORTHO05D003095 1.4e-12 77.8 208 28.8
Pp3c22_21630 Physcomitrium patens HOM05D000667 ORTHO05D003843 6.7e-12 75.5 184 27.2
AagrBONN_evm.TU.Sc2ySwM_344.5202 Anthoceros agrestis HOM05D000667 ORTHO05D003095 1.8e-09 67.4 144 31.9
AagrBONN_evm.TU.Sc2ySwM_344.4698 Anthoceros agrestis HOM05D000667 ORTHO05D003095 2.0e-08 63.9 158 28.5
Cpa.g.sc34.121 Carica papaya HOM05D007183 ORTHO05D008829 3.4e-08 63.2 129 33.3
ATR0626G150 Amborella trichopoda HOM05D000667 ORTHO05D003095 5.9e-08 62.4 124 33.1
PGR004G0270 Punica granatum HOM05D007183 ORTHO05D008829 5.9e-08 62.4 122 33.6
Potri.010G004500 Populus trichocarpa HOM05D000667 ORTHO05D003095 7.7e-08 62.0 128 30.5
Sabra08G0134100 Salix brachista HOM05D000667 ORTHO05D003843 7.7e-08 62.0 126 33.3
TWI63G1715 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 1.0e-07 61.6 104 37.5
Nitab4.5_0000170g0260 Nicotiana tabacum HOM05D003852 ORTHO05D003095 1.3e-07 61.2 116 32.8
MELO3C018752.2 Cucumis melo HOM05D007183 ORTHO05D008829 1.7e-07 60.8 108 30.6
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 1.7e-07 60.8 138 29.0
Glyma.13G243900 Glycine max HOM05D007183 ORTHO05D008829 2.9e-07 60.1 106 38.7
Mapoly0141s0015 Marchantia polymorpha HOM05D001337 ORTHO05D008829 2.9e-07 60.1 142 29.6
TAR629G0430 Trochodendron aralioides HOM05D007183 ORTHO05D008829 2.9e-07 60.1 124 33.1
Zm00001eb241600 Zea mays HOM05D000667 ORTHO05D003843 2.9e-07 60.1 128 31.2
CiPaw.01G126800 Carya illinoinensis HOM05D000667 ORTHO05D003095 3.8e-07 59.7 117 31.6
Nitab4.5_0000807g0200 Nicotiana tabacum HOM05D003852 ORTHO05D003095 3.8e-07 59.7 129 34.9
SMO118G0450 Selaginella moellendorffii HOM05D003852 ORTHO05D003095 5.0e-07 59.3 110 31.8
CANSAT35G0251 Cannabis sativa HOM05D007183 ORTHO05D008829 6.5e-07 58.9 129 29.5
Sp1g14460 Schrenkiella parvula HOM05D000667 ORTHO05D003095 6.5e-07 58.9 113 31.9
ATR0796G263 Amborella trichopoda HOM05D007183 ORTHO05D003095 8.5e-07 58.5 122 29.5
THA.LOC104812401 Tarenaya hassleriana HOM05D000667 ORTHO05D003095 8.5e-07 58.5 113 32.7
AL1G28370 Arabidopsis lyrata HOM05D000667 ORTHO05D003095 1.1e-06 58.2 113 31.9
C08p44570 Brassica napus HOM05D001040 ORTHO05D002795 1.1e-06 58.2 112 32.1
BolC8t52002H Brassica oleracea HOM05D000667 ORTHO05D003095 1.1e-06 58.2 112 32.1
FvH4_4g21831 Fragaria vesca HOM05D000667 ORTHO05D003095 1.1e-06 58.2 128 28.1
FAN17G1110 Fragaria x ananassa HOM05D000667 ORTHO05D003095 1.1e-06 58.2 128 28.1
Gohir.D02G181900 Gossypium hirsutum HOM05D007183 ORTHO05D008829 1.1e-06 58.2 125 28.0
Gorai.005G204400 Gossypium raimondii HOM05D007183 ORTHO05D008829 1.1e-06 58.2 125 28.0
THA.LOC104807883 Tarenaya hassleriana HOM05D000667 ORTHO05D003843 1.1e-06 58.2 126 31.0
Haze_13111 Corylus avellana HOM05D007183 ORTHO05D008829 1.4e-06 57.8 124 34.7
Duzib248G1149 Durio zibethinus HOM05D000667 ORTHO05D003843 1.4e-06 57.8 135 27.4
Eucgr.H04148 Eucalyptus grandis HOM05D000667 ORTHO05D003095 1.4e-06 57.8 117 30.8
RcHm_v2.0_Chr4g0428071 Rosa chinensis HOM05D000667 ORTHO05D003095 1.4e-06 57.8 128 28.9
AT1G16250 Arabidopsis thaliana HOM05D000667 ORTHO05D003095 1.9e-06 57.4 113 31.9
CAN.G275.1 Capsicum annuum HOM05D000667 ORTHO05D003095 1.9e-06 57.4 116 29.3
Thhalv10007905m.g Eutrema salsugineum HOM05D000667 ORTHO05D003095 1.9e-06 57.4 113 31.9
FAN12G3400 Fragaria x ananassa HOM05D000667 ORTHO05D003095 1.9e-06 57.4 128 28.1
PGR042G2243 Punica granatum HOM05D007183 ORTHO05D008829 1.9e-06 57.4 109 33.0
unitig_52.g17192 Utricularia gibba HOM05D000667 ORTHO05D003843 1.9e-06 57.4 66 43.9
CsaV3_7G004260 Cucumis sativus L. HOM05D007183 ORTHO05D008829 2.5e-06 57.0 108 29.6
Pp3c18_4130 Physcomitrium patens HOM05D000614 ORTHO05D003843 2.5e-06 57.0 118 29.7
Carub.0001s1599 Capsella rubella HOM05D000667 ORTHO05D003095 3.2e-06 56.6 113 31.0
CBR_g37301 Chara braunii HOM05D000667 ORTHO05D003095 3.2e-06 56.6 84 36.9
Duzib106G1028 Durio zibethinus HOM05D000667 ORTHO05D003095 3.2e-06 56.6 128 27.3
MD16G1131800 Malus domestica HOM05D000667 ORTHO05D003095 3.2e-06 56.6 128 28.9
Sopen07g022540 Solanum pennellii HOM05D003852 ORTHO05D003095 3.2e-06 56.6 116 30.2
Thecc.02G174600 Theobroma cacao HOM05D007183 ORTHO05D008829 3.2e-06 56.6 125 30.4
COL.COLO4_32975 Corchorus olitorius HOM05D000667 ORTHO05D003095 4.2e-06 56.2 128 26.6
Gohir.A03G158800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 4.2e-06 56.2 125 28.0
arahy.Tifrunner.gnm1.ann1.EK8XNT Arachis hypogaea HOM05D007183 ORTHO05D008829 5.5e-06 55.8 104 29.8
ClCG02G001190 Citrullus lanatus HOM05D007183 ORTHO05D008829 5.5e-06 55.8 108 28.7
COL.COLO4_35412 Corchorus olitorius HOM05D007183 ORTHO05D008829 5.5e-06 55.8 123 30.1
Glyma.15G069800 Glycine max HOM05D007183 ORTHO05D008829 5.5e-06 55.8 106 34.9
Gohir.A10G022800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 5.5e-06 55.8 109 31.2
Prupe.1G209000 Prunus persica HOM05D000667 ORTHO05D003095 5.5e-06 55.8 122 30.3
Lj3A1066T76 Lonicera japonica HOM05D000667 ORTHO05D003843 7.2e-06 55.5 144 26.4
PSO017G3537 Papaver somniferum HOM05D000667 ORTHO05D003843 7.2e-06 55.5 133 27.1
PSO478G3524 Papaver somniferum HOM05D000667 ORTHO05D003843 7.2e-06 55.5 133 27.1
Psat5g094920 Pisum sativum HOM05D000667 ORTHO05D003843 7.2e-06 55.5 119 27.7
Thecc.06G194600 Theobroma cacao HOM05D007183 ORTHO05D008829 7.2e-06 55.5 127 32.3
C08p17400 Brassica napus HOM05D001040 ORTHO05D002795 9.4e-06 55.1 113 31.0
BolC8t49366H Brassica oleracea HOM05D001040 ORTHO05D002795 9.4e-06 55.1 113 31.0
CBR_g38018 Chara braunii HOM05D000667 ORTHO05D003843 9.4e-06 55.1 98 32.7
ECA234G1429 Erigeron canadensis HOM05D007183 ORTHO05D000476 9.4e-06 55.1 122 29.5
Sed0002450 Sechium edule HOM05D000667 ORTHO05D003843 9.4e-06 55.1 128 28.9
Sed0026806 Sechium edule HOM05D007183 ORTHO05D008829 9.4e-06 55.1 72 37.5


User provided reference genes

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