Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.2e-177 625.9 416 100.0
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 6.4e-105 385.2 447 66.2
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.6e-100 370.5 445 54.6
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.2e-100 368.6 241 78.4
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.8e-99 367.1 444 61.5
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 2.4e-99 366.7 458 59.8
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.5e-98 364.0 423 58.2
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.6e-98 363.2 444 61.0
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 7.6e-98 361.7 481 55.7
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.7e-97 360.5 409 60.6
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.9e-97 359.8 239 78.2
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 6.4e-97 358.6 250 74.8
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 8.4e-97 358.2 250 74.8
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 8.4e-97 358.2 239 76.2
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.1e-96 357.8 448 62.3
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.1e-96 357.8 241 75.9
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.1e-96 357.8 241 77.6
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.4e-96 357.5 241 78.4
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.4e-96 357.5 254 73.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.9e-96 357.1 239 75.7
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.9e-96 357.1 444 54.5
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.4e-96 356.7 446 59.9
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.2e-96 356.3 445 60.2
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.1e-96 355.1 242 75.6
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 7.1e-96 355.1 433 53.3
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 9.3e-96 354.8 239 75.7
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 9.3e-96 354.8 244 76.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 9.3e-96 354.8 247 74.5
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.2e-95 354.4 239 75.3
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.2e-95 354.4 239 75.3
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.6e-95 354.0 254 72.0
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.1e-95 353.6 239 75.7
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.1e-95 353.6 248 73.0
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.1e-95 353.6 253 72.7
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.7e-95 353.2 239 75.3
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.7e-95 353.2 260 71.5
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 2.7e-95 353.2 239 77.8
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.7e-95 353.2 247 72.9
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.6e-95 352.4 248 73.8
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 4.6e-95 352.4 248 73.4
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.0e-94 351.3 239 74.5
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.0e-94 351.3 239 74.5
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.0e-94 351.3 239 74.5
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.8e-94 350.5 255 71.8
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.8e-94 350.5 253 74.7
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 3.0e-94 349.7 453 57.8
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 3.0e-94 349.7 239 76.6
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.9e-94 349.4 254 71.7
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.1e-93 347.8 483 51.8
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.5e-93 347.4 251 70.9
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.5e-93 347.4 456 53.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.9e-93 347.1 254 71.7
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.9e-93 347.1 256 69.9
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.5e-93 346.7 239 75.3
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 5.6e-93 345.5 455 57.6
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 2.1e-92 343.6 248 72.2
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.8e-92 343.2 239 74.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.7e-92 342.8 246 71.1
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 6.2e-92 342.0 239 75.3
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 2.4e-91 340.1 251 69.3
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.4e-91 340.1 239 74.9
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.4e-91 340.1 440 52.0
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 5.3e-91 339.0 254 72.4
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.2e-90 337.8 239 72.4
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-90 337.4 239 72.0
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 1.5e-90 337.4 239 72.0
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 2.0e-90 337.0 239 72.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 2.0e-90 337.0 249 73.1
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 2.6e-90 336.7 253 68.8
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 3.4e-90 336.3 242 71.1
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 3.4e-90 336.3 239 72.0
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.3e-89 334.3 249 70.7
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-89 334.3 239 72.4
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.9e-89 332.4 251 69.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 8.4e-89 331.6 249 69.1
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.9e-88 330.5 249 67.9
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.2e-88 329.7 308 65.6
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.2e-88 329.3 238 73.1
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 5.5e-88 328.9 239 69.5
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 5.5e-88 328.9 456 52.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 5.5e-88 328.9 239 71.1
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 7.1e-88 328.6 249 68.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.2e-87 327.8 239 71.1
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.6e-87 327.4 239 69.0
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.1e-87 327.0 461 61.2
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 3.5e-87 326.2 243 69.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 3.5e-87 326.2 239 72.4
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 4.6e-87 325.9 239 69.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.0e-87 325.5 438 58.4
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.3e-86 323.6 448 58.0
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 8.7e-86 321.6 449 49.9
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 8.7e-86 321.6 244 69.3
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 8.7e-86 321.6 244 70.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.1e-85 321.2 251 68.9
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 2.5e-85 320.1 239 69.9
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.5e-85 320.1 447 57.9
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.5e-85 320.1 239 69.9
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 3.3e-85 319.7 260 67.3
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 4.3e-85 319.3 234 71.4
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 7.4e-85 318.5 249 65.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.6e-84 317.4 234 73.1
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.6e-84 317.4 242 69.4
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.7e-84 316.2 413 54.0
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.1e-83 314.7 231 69.3
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 3.1e-83 313.2 394 56.3
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 5.3e-83 312.4 232 69.0
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.9e-82 308.9 417 52.0
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 5.9e-82 308.9 413 52.5
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.2e-81 307.0 232 68.5
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 3.8e-81 306.2 243 63.8
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 7.2e-80 302.0 247 64.4
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.1e-77 294.7 405 48.1
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.9e-77 293.9 214 73.8
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 3.7e-76 289.7 234 65.4
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 6.3e-76 288.9 310 53.2
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 2.7e-71 273.5 223 63.7
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 1.2e-66 258.1 227 62.1
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.7e-60 237.7 239 51.0
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 6.7e-54 215.7 234 48.7
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 3.4e-45 186.8 250 40.0
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 3.7e-44 183.3 246 43.5
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 3.7e-44 183.3 245 44.5
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 3.2e-40 170.2 113 76.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.5e-40 169.5 239 43.1
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.2e-39 168.3 230 40.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 6.8e-38 162.5 249 38.2
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 7.0e-35 152.5 90 82.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 7.8e-34 149.1 135 57.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.0e-33 146.4 236 39.4
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 4.3e-32 143.3 217 38.2
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.4e-27 128.3 223 35.9
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.6e-26 124.8 221 32.1
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 5.9e-26 122.9 227 37.0
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 7.3e-24 115.9 226 30.5
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.4e-22 111.7 160 43.8
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 5.2e-22 109.8 215 29.3
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.7e-20 104.8 221 33.9
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 6.4e-20 102.8 269 53.5
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 5.6e-16 89.7 285 44.9
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.3e-14 84.3 244 30.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 2.0e-13 81.3 130 40.0
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 5.4e-11 73.2 105 44.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.7e-10 70.9 69 47.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 1.0e-09 68.9 108 43.5
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.3e-09 68.6 105 41.0
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.3e-09 67.8 39 66.7
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.5e-08 65.1 54 50.0
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.6e-07 61.6 49 53.1
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 4.7e-07 60.1 134 32.8


User provided reference genes

Program Settings