Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 7.1e-145 518.1 464 100.0
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 4.8e-77 292.7 271 59.4
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 1.0e-74 285.0 275 58.9
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 1.9e-73 280.8 268 57.5
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 5.5e-73 279.3 267 57.3
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 9.5e-73 278.5 265 56.2
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 4.0e-71 273.1 270 55.6
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 5.7e-70 269.2 272 55.9
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 1.2e-67 261.5 279 52.3
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 6.6e-66 255.8 263 54.0
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 3.3e-65 253.4 268 57.5
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 5.6e-65 252.7 277 53.8
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 1.6e-64 251.1 269 55.8
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 4.7e-64 249.6 272 52.9
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 6.1e-64 249.2 271 54.6
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 5.2e-63 246.1 268 54.1
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 6.8e-63 245.7 269 52.4
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 1.2e-62 245.0 275 52.4
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 1.2e-62 245.0 270 53.3
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 2.6e-62 243.8 275 51.6
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 2.6e-62 243.8 263 52.5
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 3.4e-62 243.4 263 52.5
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 2.9e-61 240.4 277 52.3
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.1e-60 238.4 256 53.9
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 5.4e-60 236.1 256 53.1
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 7.0e-60 235.7 266 50.8
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 2.0e-59 234.2 263 52.9
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 4.6e-59 233.0 274 51.1
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 2.3e-58 230.7 265 49.4
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 3.9e-58 229.9 265 50.2
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 5.0e-58 229.6 260 50.4
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 6.6e-58 229.2 266 49.6
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 6.6e-58 229.2 279 49.5
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 8.6e-58 228.8 265 51.3
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 2.5e-57 227.3 262 49.6
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 6.2e-56 222.6 265 49.8
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 4.0e-55 219.9 272 51.1
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 8.9e-55 218.8 152 70.4
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 2.0e-54 217.6 263 49.4
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 4.4e-54 216.5 269 47.6
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 9.8e-54 215.3 269 47.2
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 9.8e-54 215.3 269 49.8
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 1.3e-53 214.9 262 49.2
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 2.2e-53 214.2 266 47.0
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 4.9e-53 213.0 177 63.8
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 8.3e-53 212.2 266 48.9
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 1.4e-52 211.5 267 47.6
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 3.2e-52 210.3 262 47.3
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 3.2e-52 210.3 262 48.1
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 5.4e-52 209.5 265 49.1
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 7.0e-52 209.1 271 46.9
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 2.3e-50 204.1 269 46.8
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 4.3e-49 199.9 275 46.2
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 5.6e-49 199.5 274 46.0
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 1.2e-48 198.4 279 44.1
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 1.6e-48 198.0 265 44.5
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 8.1e-48 195.7 265 45.7
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.3e-47 194.1 264 44.3
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 9.8e-46 188.7 263 44.9
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 2.2e-45 187.6 262 44.7
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 1.9e-44 184.5 268 44.0
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 2.1e-43 181.0 151 60.3
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 2.1e-43 181.0 151 59.6
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 3.5e-43 180.3 151 58.9
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 6.0e-43 179.5 245 45.3
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 1.0e-42 178.7 239 46.4
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 1.5e-41 174.9 233 45.5
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 4.3e-41 173.3 236 43.2
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 4.0e-39 166.8 148 55.4
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 6.8e-39 166.0 226 46.0
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 5.8e-38 162.9 190 51.6
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 2.2e-37 161.0 189 49.7
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 2.4e-36 157.5 272 43.0
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 7.1e-36 156.0 243 42.4
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 7.8e-35 152.5 226 43.8
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 1.3e-34 151.8 200 47.5
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 1.9e-33 147.9 193 44.6
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.1e-31 142.1 197 46.2
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 2.0e-30 137.9 210 44.8
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.3e-29 135.2 194 46.4
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 2.7e-27 127.5 203 41.4
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 3.0e-26 124.0 215 40.9
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 3.0e-26 124.0 191 42.4
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 2.1e-24 117.9 112 51.8
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 4.0e-23 113.6 123 49.6
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 4.5e-22 110.2 106 51.9
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 3.5e-19 100.5 266 35.0
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 6.0e-19 99.8 137 42.3
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 4.5e-14 83.6 80 52.5
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 2.1e-11 74.7 239 29.3
CSS0049050 Camellia sinensis var. sinensis HOM05D007700 ORTHO05D009669 3.7e-08 63.9 36 86.1
ECA238G1378 Erigeron canadensis HOM05D007700 ORTHO05D009669 4.8e-08 63.5 36 83.3
Sp3g31030 Schrenkiella parvula HOM05D007700 ORTHO05D009669 6.2e-08 63.2 36 83.3
CAN.G1081.5 Capsicum annuum HOM05D000058 ORTHO05D000255 1.5e-06 58.5 105 31.4
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 2.0e-06 58.2 152 24.3
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 2.0e-06 58.2 143 28.7
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 2.6e-06 57.8 166 25.9
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 3.4e-06 57.4 152 24.3
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 3.4e-06 57.4 152 24.3
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 3.4e-06 57.4 177 26.6
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 3.4e-06 57.4 97 30.9
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 4.5e-06 57.0 152 24.3
VMungo1127G1215 Vigna mungo HOM05D007402 ORTHO05D003673 5.8e-06 56.6 102 28.4
Solyc04g076370.4 Solanum lycopersicum HOM05D007402 ORTHO05D003673 7.6e-06 56.2 104 27.9
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 7.6e-06 56.2 104 27.9
PGSC0003DMG400009341 Solanum tuberosum HOM05D007402 ORTHO05D003673 7.6e-06 56.2 104 27.9
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 1.0e-05 55.8 171 25.1
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 1.0e-05 55.8 134 29.1


User provided reference genes

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