Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 7.7e-141 503.8 260 100.0
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.7e-116 422.9 260 82.3
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.7e-116 422.9 260 82.3
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.9e-115 419.5 261 83.1
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 7.3e-115 417.5 260 82.7
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 7.3e-115 417.5 263 82.9
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.8e-113 412.9 260 80.8
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.2e-112 410.2 260 81.5
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 4.4e-112 408.3 260 81.5
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 4.4e-112 408.3 264 79.5
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 4.4e-112 408.3 260 79.6
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 5.8e-112 407.9 261 80.5
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.4e-110 403.3 261 82.0
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 2.4e-110 402.5 260 80.8
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 3.2e-110 402.1 261 78.5
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 4.1e-110 401.7 261 78.2
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 5.4e-110 401.4 261 77.8
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 7.1e-110 401.0 254 81.9
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 7.1e-110 401.0 260 78.1
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.6e-109 399.8 261 81.2
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 2.1e-109 399.4 261 78.5
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 2.7e-109 399.1 261 78.5
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.7e-109 399.1 260 80.8
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.7e-109 399.1 260 80.8
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 3.5e-109 398.7 261 78.9
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 3.5e-109 398.7 264 78.8
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 4.6e-109 398.3 261 77.4
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 4.6e-109 398.3 260 80.8
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 6.0e-109 397.9 261 78.5
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.0e-108 397.1 261 78.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 2.3e-108 396.0 267 76.4
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.0e-108 395.6 261 80.1
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.9e-108 395.2 261 78.2
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 6.6e-108 394.4 260 77.3
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.1e-107 393.7 256 78.5
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.1e-107 393.7 260 79.2
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 1.9e-107 392.9 262 79.0
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.5e-107 392.5 262 80.5
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 2.5e-107 392.5 261 76.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 7.3e-107 391.0 261 79.7
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 9.6e-107 390.6 261 79.3
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.2e-106 390.2 260 79.2
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.2e-106 390.2 260 78.8
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.2e-106 390.2 262 80.2
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 2.1e-106 389.4 261 78.5
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 3.6e-106 388.7 262 78.6
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 4.7e-106 388.3 262 79.0
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 2.4e-105 386.0 262 77.1
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 3.1e-105 385.6 260 78.5
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 8.9e-105 384.0 260 77.3
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 5.8e-104 381.3 262 76.0
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 5.8e-104 381.3 260 77.7
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 7.6e-104 380.9 263 76.8
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 7.6e-104 380.9 263 76.4
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 9.9e-104 380.6 263 74.1
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 8.4e-103 377.5 240 79.2
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 8.4e-103 377.5 257 78.6
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.4e-102 376.7 261 77.0
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.4e-102 376.7 261 77.0
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.4e-102 376.7 264 73.5
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.4e-102 375.9 262 76.0
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 2.4e-102 375.9 261 77.4
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 2.4e-102 375.9 261 75.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 4.2e-102 375.2 260 75.8
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 4.2e-102 375.2 262 78.2
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.2e-102 375.2 262 76.3
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 5.4e-102 374.8 260 76.5
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 1.2e-101 373.6 234 84.6
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.6e-101 373.2 264 72.7
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 3.5e-101 372.1 246 76.8
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 4.6e-101 371.7 261 72.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 6.0e-101 371.3 264 73.1
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 6.0e-101 371.3 264 73.1
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.3e-100 370.2 263 74.9
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 5.1e-100 368.2 261 74.7
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 6.6e-100 367.9 267 73.0
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.5e-99 366.7 268 70.5
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.5e-99 366.7 261 75.5
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.9e-99 366.3 267 72.3
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 1.9e-99 366.3 263 74.5
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 7.3e-99 364.4 267 71.9
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 7.3e-99 364.4 267 71.9
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.3e-99 364.4 263 73.8
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 7.3e-99 364.4 262 73.7
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 9.6e-99 364.0 262 72.9
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.3e-98 363.6 263 73.4
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 3.6e-98 362.1 267 72.3
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 3.6e-98 362.1 262 72.5
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 5.8e-96 354.8 266 71.1
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 9.9e-96 354.0 268 70.5
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.0e-92 344.0 261 70.1
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.3e-92 343.6 264 69.7
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 3.0e-92 342.4 264 69.3
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 3.0e-92 342.4 268 67.9
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 5.1e-92 341.7 260 71.2
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.5e-91 340.1 257 69.6
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 1.6e-90 336.7 255 69.4
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 6.9e-89 331.3 205 81.5
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.5e-88 330.1 234 73.5
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.2e-86 322.4 228 71.1
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-81 307.4 212 75.9
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.5e-78 296.2 260 60.0
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.5e-75 287.0 262 63.4
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 7.4e-75 284.6 258 59.3
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.8e-73 280.0 238 62.6
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 4.1e-73 278.9 264 59.5
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 3.8e-71 272.3 183 79.8
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.1e-70 270.8 170 80.6
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 4.2e-70 268.9 155 87.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.4e-65 253.8 205 65.4
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 7.2e-62 241.5 263 49.4
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 5.9e-56 221.9 172 66.9
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 6.5e-55 218.4 224 53.1
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 8.0e-45 184.9 176 60.8
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.5e-43 180.6 262 46.9
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.2e-40 171.0 150 61.3
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 3.0e-28 129.8 104 61.5
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 6.6e-23 112.1 81 69.1
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.5e-22 110.2 85 67.1
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 7.3e-22 108.6 85 67.1
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 2.8e-21 106.7 85 67.1
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.2e-08 64.7 66 53.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 4.6e-08 62.8 66 53.0
CDE06G0370 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 8.6e-07 58.5 70 48.6


User provided reference genes

Program Settings