Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.1e-90 336.7 169 100.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.2e-56 222.6 175 67.4
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.8e-51 205.7 169 63.3
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 7.0e-50 201.1 173 63.0
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.2e-48 196.1 177 59.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.1e-47 193.7 176 61.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.5e-47 193.4 180 62.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.5e-47 192.6 176 62.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 9.4e-47 190.7 178 58.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.6e-46 188.7 179 59.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 4.7e-46 188.3 177 58.8
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.0e-46 187.6 167 61.7
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.0e-45 187.2 169 59.8
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.0e-45 187.2 175 57.1
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 8.8e-45 184.1 178 57.9
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.2e-44 183.7 180 56.1
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.0e-44 183.0 172 60.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.6e-44 182.6 180 56.7
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.4e-44 182.2 182 56.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.7e-44 181.4 181 54.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 7.5e-44 181.0 173 59.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.7e-43 179.9 178 56.7
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.7e-43 179.9 171 59.1
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.8e-43 178.3 175 54.3
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 6.3e-43 177.9 179 56.4
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.4e-42 176.8 180 55.6
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.8e-42 176.4 177 55.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.4e-42 176.0 180 55.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.1e-42 175.6 167 62.9
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 5.4e-42 174.9 182 54.4
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 9.1e-42 174.1 183 56.3
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 9.1e-42 174.1 151 62.3
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.6e-41 173.3 177 54.2
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.0e-41 172.9 185 54.1
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.5e-41 172.2 168 61.9
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 5.9e-41 171.4 182 52.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.7e-40 169.9 182 53.8
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.6e-40 167.9 183 53.0
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 8.6e-40 167.5 175 55.4
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 8.6e-40 167.5 175 52.0
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.5e-39 166.8 186 51.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.5e-39 166.0 181 52.5
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.3e-39 165.6 176 54.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.5e-39 164.9 174 54.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 5.5e-39 164.9 186 54.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 7.2e-39 164.5 184 53.3
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-38 163.7 174 54.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.6e-38 163.3 191 53.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-38 163.3 191 53.4
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-38 163.3 191 53.4
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.8e-38 162.5 189 51.3
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.6e-38 162.2 175 54.3
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 4.7e-38 161.8 169 56.8
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.7e-38 161.8 193 52.8
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.1e-38 161.4 163 55.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.0e-38 161.0 191 52.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-37 160.6 191 52.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.3e-37 159.5 178 55.6
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.0e-37 159.1 171 58.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.0e-37 158.7 175 53.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 5.2e-37 158.3 169 55.6
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 5.2e-37 158.3 169 52.7
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.8e-37 157.9 199 49.2
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.6e-36 156.0 176 52.8
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.4e-36 155.6 186 47.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.4e-36 155.2 173 53.2
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 9.8e-36 154.1 184 47.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.2e-35 152.9 182 48.9
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.2e-35 152.9 182 48.9
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.8e-35 152.5 186 48.4
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.8e-35 152.5 184 48.4
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.7e-35 152.1 182 50.5
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.9e-35 151.8 199 46.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 4.9e-35 151.8 177 52.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.3e-35 151.4 178 53.4
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-34 149.8 176 50.0
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.1e-34 149.1 173 52.0
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.1e-34 149.1 174 52.3
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.4e-34 148.3 174 50.0
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 9.2e-34 147.5 185 49.7
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.6e-33 146.7 180 48.3
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-33 146.7 176 48.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.6e-33 146.7 171 50.9
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.5e-33 145.2 183 48.6
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.9e-33 144.8 173 51.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.9e-33 144.8 173 51.4
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.0e-32 144.1 183 49.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.7e-32 143.3 179 48.6
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-32 143.3 188 46.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.9e-32 142.5 186 46.2
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.9e-32 142.1 183 44.8
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 3.9e-32 142.1 179 47.5
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 5.0e-32 141.7 168 46.4
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 6.6e-32 141.4 179 45.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.1e-31 140.6 190 46.8
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.9e-31 139.8 188 44.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.9e-31 139.8 187 48.1
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.9e-31 139.8 187 46.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.5e-31 137.5 184 46.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 9.5e-31 137.5 193 46.1
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-30 137.1 149 53.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-30 136.7 173 50.9
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.1e-30 136.3 180 46.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.1e-30 136.3 179 49.7
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.1e-30 136.3 184 46.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-30 136.0 172 51.7
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-30 136.0 172 51.7
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-30 135.2 173 50.3
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 6.1e-30 134.8 176 50.0
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 8.0e-30 134.4 176 50.0
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 8.0e-30 134.4 178 49.4
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 8.0e-30 134.4 196 42.9
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-29 133.7 178 49.4
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.4e-29 133.7 174 49.4
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.8e-29 133.3 177 49.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 4.0e-29 132.1 189 45.0
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.2e-29 131.7 175 49.1
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 8.9e-29 131.0 194 44.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-28 130.6 171 49.1
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.5e-28 130.2 175 48.6
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.5e-28 130.2 187 46.5
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.0e-28 129.8 175 48.6
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.6e-28 129.4 187 42.8
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.4e-28 129.0 179 49.7
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.4e-28 128.6 173 44.5
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 5.8e-28 128.3 179 42.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 9.8e-28 127.5 165 49.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-27 126.7 177 45.8
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.7e-27 126.7 176 47.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.2e-27 126.3 172 46.5
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-27 126.3 176 46.0
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.9e-27 125.9 209 43.5
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.9e-27 125.2 183 43.2
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.9e-27 125.2 158 47.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.4e-27 124.8 174 44.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 6.4e-27 124.8 108 58.3
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.9e-26 123.2 189 40.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.9e-26 123.2 118 59.3
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 5.4e-26 121.7 189 43.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 7.0e-26 121.3 175 42.3
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 9.2e-26 120.9 118 59.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-25 120.6 187 43.9
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.6e-25 120.2 166 47.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.6e-25 120.2 175 42.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-25 119.8 187 43.3
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.0e-25 119.8 187 41.2
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 3.5e-25 119.0 191 42.9
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 4.6e-25 118.6 167 44.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.0e-25 118.2 197 40.6
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 8.6e-24 114.4 169 45.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.1e-23 114.0 147 46.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.5e-23 112.8 170 42.9
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.3e-23 112.1 154 46.8
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 7.3e-23 111.3 195 39.0
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 7.3e-23 111.3 195 39.0
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 9.5e-23 110.9 196 38.8
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.8e-22 109.4 146 49.3
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.2e-22 108.2 175 45.1
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-21 107.1 175 42.3
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.5e-20 103.6 165 41.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.4e-20 102.1 182 41.8
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-19 100.5 181 42.5
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-19 100.5 123 52.0
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 8.3e-19 97.8 172 41.9
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.1e-18 97.4 182 40.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-18 97.4 170 42.9
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-18 97.4 170 42.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-18 96.3 170 42.4
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 7.0e-18 94.7 146 40.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 9.2e-18 94.4 171 40.9
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.7e-17 92.8 136 41.9
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 4.6e-17 92.0 137 41.6
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.8e-17 91.3 171 40.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.0e-16 90.9 116 43.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.3e-15 85.9 105 48.6
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.2e-14 81.6 155 36.1
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.1e-13 80.9 155 35.5
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.1e-13 80.9 64 67.2
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.7e-11 73.6 64 57.8
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.9e-11 72.0 77 51.9
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 2.4e-10 69.7 195 31.3
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.3e-08 63.9 62 56.5
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.3e-08 63.2 75 49.3
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.1e-08 62.0 157 33.8
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.2e-06 57.4 125 35.2


User provided reference genes

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