Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 7.4e-167 590.5 306 100.0
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.1e-69 267.7 306 58.2
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.9e-69 266.9 332 51.2
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 6.0e-68 261.9 349 50.7
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 7.9e-68 261.5 358 50.6
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.9e-66 256.9 345 48.7
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.9e-64 248.4 336 47.0
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 6.9e-64 248.4 308 55.2
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 3.4e-63 246.1 350 49.4
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.0e-62 244.6 329 52.6
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.3e-62 244.2 344 48.3
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 2.2e-62 243.4 336 49.1
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.9e-62 242.3 327 52.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.1e-61 241.1 340 47.6
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.4e-61 240.7 350 48.3
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.5e-61 238.8 368 49.2
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 5.5e-61 238.8 346 48.8
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.6e-60 235.7 336 47.0
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.1e-60 235.3 352 47.2
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.3e-59 234.2 336 47.3
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.8e-59 233.8 337 47.2
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.0e-59 233.0 368 46.7
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 3.9e-59 232.6 348 48.6
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 5.1e-59 232.3 349 47.0
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 6.7e-59 231.9 309 48.2
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 4.3e-58 229.2 321 48.0
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.3e-57 227.6 307 50.8
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.2e-57 226.9 335 47.2
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.8e-57 226.5 324 47.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.3e-57 225.3 324 47.8
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 8.2e-57 224.9 364 45.9
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.8e-56 223.8 327 47.7
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 4.1e-56 222.6 352 46.3
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 5.3e-56 222.2 356 46.1
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 9.0e-56 221.5 320 47.5
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.5e-55 220.7 304 47.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.0e-55 220.3 335 46.3
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.0e-55 220.3 352 45.2
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.6e-55 219.9 317 47.9
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.6e-55 219.9 349 47.6
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 2.6e-55 219.9 342 46.5
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.6e-55 219.9 342 46.5
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 5.9e-55 218.8 346 44.5
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.2e-54 216.9 304 47.4
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.9e-54 216.5 316 48.4
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.5e-54 215.3 324 47.2
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 8.5e-54 214.9 386 44.8
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 2.5e-53 213.4 306 47.1
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 5.5e-53 212.2 344 45.1
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 7.2e-53 211.8 350 46.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 9.4e-53 211.5 322 48.4
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.2e-52 211.1 361 42.7
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 2.1e-52 210.3 330 47.3
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.7e-52 209.9 354 44.1
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.7e-52 209.9 349 44.1
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.0e-51 208.0 321 46.4
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 3.0e-51 206.5 355 43.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.1e-50 204.5 341 46.0
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.1e-50 204.5 306 49.0
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.1e-50 204.5 301 47.5
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.5e-50 204.1 350 44.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.0e-50 203.8 337 46.3
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 3.3e-50 203.0 322 47.2
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 3.3e-50 203.0 401 39.7
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 4.3e-50 202.6 324 44.8
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 9.7e-50 201.4 344 44.2
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.3e-49 201.1 344 44.2
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.7e-49 200.7 301 47.2
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.7e-49 200.7 342 44.2
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 2.2e-49 200.3 326 46.3
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.8e-49 199.9 324 48.1
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.8e-49 199.9 335 45.1
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.7e-49 199.5 329 45.3
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 3.7e-49 199.5 344 43.6
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.7e-49 199.5 342 46.8
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 4.8e-49 199.1 227 55.5
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.3e-49 198.7 324 46.6
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.1e-48 198.0 330 44.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.8e-48 197.2 324 47.2
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 4.1e-48 196.1 318 46.9
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 5.3e-48 195.7 337 43.3
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 6.9e-48 195.3 288 43.8
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.5e-47 194.1 341 44.6
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 3.4e-47 193.0 338 45.6
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.5e-47 192.6 328 46.6
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 5.9e-47 192.2 334 44.6
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.0e-46 191.4 373 42.6
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.3e-46 191.0 345 43.2
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.2e-46 190.3 345 42.3
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.2e-46 190.3 345 42.3
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.2e-46 190.3 345 42.3
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 2.2e-46 190.3 413 38.7
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 3.8e-46 189.5 323 44.9
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 6.5e-46 188.7 338 43.5
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 2.5e-45 186.8 283 45.9
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 4.2e-45 186.0 283 47.3
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 5.5e-45 185.7 342 43.9
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 7.2e-45 185.3 341 44.6
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 9.4e-45 184.9 297 45.8
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.6e-44 184.1 311 45.7
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.1e-44 183.7 335 42.4
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.7e-44 182.6 347 42.9
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.4e-43 181.0 347 41.5
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.8e-43 180.6 327 42.8
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.8e-43 180.6 346 43.4
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.1e-42 177.9 294 45.2
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-41 174.5 299 43.5
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.3e-41 174.5 299 43.5
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 3.7e-41 172.9 298 45.0
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 3.7e-41 172.9 332 41.0
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 3.7e-41 172.9 354 39.5
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 6.3e-41 172.2 318 43.4
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 6.3e-41 172.2 338 42.6
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 8.2e-41 171.8 347 40.3
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.4e-40 170.2 324 42.0
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.3e-40 169.1 309 39.5
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.2e-39 167.9 299 43.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 1.5e-39 167.5 273 44.7
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.6e-39 166.8 345 38.8
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 7.7e-39 165.2 263 44.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.7e-38 164.1 240 48.3
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.9e-38 163.3 352 40.6
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.2e-37 158.7 189 52.9
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 8.8e-35 151.8 208 52.9
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 8.8e-35 151.8 157 58.0
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.0e-34 150.6 339 37.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 3.3e-34 149.8 273 42.9
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 3.3e-34 149.8 162 58.6
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 5.7e-34 149.1 303 39.9
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.4e-34 148.7 318 40.6
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.8e-33 146.7 317 39.4
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 9.1e-32 141.7 341 38.1
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.1e-32 141.7 210 48.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.1e-32 141.7 345 40.3
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.6e-31 141.0 346 38.7
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 7.7e-31 138.7 221 45.7
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 7.7e-31 138.7 282 39.7
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 9.4e-29 131.7 316 39.2
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 2.1e-28 130.6 308 37.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.6e-28 129.8 259 39.4
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.3e-25 121.3 229 38.4
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 6.3e-25 119.0 297 34.7
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-24 117.9 126 58.7
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 3.1e-24 116.7 353 33.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.2e-23 114.8 303 36.0
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 3.5e-23 113.2 143 51.7
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.2e-22 110.5 160 48.1
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.5e-21 107.1 305 35.7
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.5e-18 97.8 288 35.1
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.7e-17 93.2 339 32.2
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 4.9e-17 92.8 342 31.9
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 6.3e-17 92.4 215 35.8
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.0e-14 85.1 203 37.9
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 2.3e-11 73.9 187 36.9
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 4.4e-10 69.7 143 40.6
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 2.7e-07 60.5 62 53.2
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 5.0e-06 56.2 147 36.1


User provided reference genes

Program Settings