Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 4.8e-74 281.2 153 100.0
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 8.6e-15 84.3 153 44.4
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.3e-14 82.4 153 45.8
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 7.3e-14 81.3 153 40.5
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 9.5e-14 80.9 162 40.7
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 1.2e-13 80.5 160 41.2
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.1e-13 79.7 153 39.9
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 3.6e-13 79.0 163 36.8
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.2e-13 78.2 153 37.9
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 8.1e-13 77.8 146 39.7
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 3.1e-12 75.9 153 41.8
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.5e-11 73.6 158 38.6
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.3e-10 70.5 153 39.9
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.3e-10 70.5 153 39.9
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 2.2e-10 69.7 161 37.3
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.9e-10 69.3 153 39.9
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.8e-10 68.9 153 37.9
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 3.8e-10 68.9 153 37.9
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.4e-10 68.2 155 43.2
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 8.4e-10 67.8 153 39.9
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.1e-09 67.4 158 38.6
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.1e-09 67.4 155 39.4
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.1e-09 67.4 153 35.9
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 1.4e-09 67.0 154 39.0
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 1.4e-09 67.0 155 36.8
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.9e-09 66.6 153 35.9
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.4e-09 66.2 154 39.6
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 2.4e-09 66.2 155 35.5
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.1e-09 65.5 156 36.5
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 4.1e-09 65.5 152 38.2
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 4.1e-09 65.5 152 38.2
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.1e-09 65.5 153 38.6
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 4.1e-09 65.5 153 38.6
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 4.1e-09 65.5 157 35.7
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 4.1e-09 65.5 157 35.7
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 7.1e-09 64.7 156 39.1
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 7.1e-09 64.7 161 34.2
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.1e-09 64.7 153 37.3
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.6e-08 63.5 154 35.1
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.1e-08 63.2 157 36.9
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.7e-08 62.8 156 37.2
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 2.7e-08 62.8 153 34.6
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 3.5e-08 62.4 155 40.0
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 4.6e-08 62.0 154 39.6
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 4.6e-08 62.0 151 37.1
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 4.6e-08 62.0 164 38.4
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.6e-08 62.0 157 37.6
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 6.0e-08 61.6 153 36.6
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 7.8e-08 61.2 143 37.8
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 7.8e-08 61.2 143 32.9
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.0e-07 60.8 126 40.5
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.3e-07 60.5 126 40.5
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.7e-07 60.1 79 51.9
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 1.7e-07 60.1 154 36.4
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.7e-07 60.1 126 41.3
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-07 60.1 126 41.3
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-07 60.1 126 41.3
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-07 60.1 126 41.3
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.7e-07 60.1 153 35.3
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.7e-07 60.1 153 35.3
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.7e-07 60.1 153 35.3
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 2.3e-07 59.7 109 40.4
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 3.0e-07 59.3 155 35.5
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.0e-07 59.3 169 37.3
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 3.0e-07 59.3 88 45.5
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 3.9e-07 58.9 79 51.9
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.9e-07 58.9 166 34.3
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 5.1e-07 58.5 158 37.3
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 5.1e-07 58.5 157 36.9
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 5.1e-07 58.5 149 41.6
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 6.6e-07 58.2 146 36.3
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 6.6e-07 58.2 111 40.5
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 6.6e-07 58.2 124 38.7
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.5e-06 57.0 153 35.3
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 1.9e-06 56.6 143 33.6
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.9e-06 56.6 160 38.1
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 3.3e-06 55.8 160 34.4
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 3.3e-06 55.8 156 37.2
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.3e-06 55.8 153 36.6
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.3e-06 55.8 153 36.6
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 3.3e-06 55.8 157 34.4
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 3.3e-06 55.8 156 35.3
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 4.3e-06 55.5 97 37.1
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 4.3e-06 55.5 97 39.2
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 5.6e-06 55.1 145 40.7
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 7.3e-06 54.7 156 34.6
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.3e-06 54.7 169 34.9
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 9.6e-06 54.3 155 38.1


User provided reference genes

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