Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 4.5e-118 429.1 482 100.0
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 2.9e-32 144.1 531 69.3
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 3.8e-32 143.7 513 71.5
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.9e-31 141.4 526 70.3
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 1.9e-31 141.4 505 72.7
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.4e-31 139.8 527 70.0
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.4e-31 139.8 527 70.0
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 4.6e-30 136.7 526 69.8
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 6.0e-30 136.3 519 70.1
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 3.9e-29 133.7 524 69.1
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 9.6e-28 129.0 532 68.6
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.3e-27 128.6 523 69.4
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 3.7e-27 127.1 508 70.3
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 8.1e-27 125.9 512 68.6
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.4e-26 125.2 506 70.2
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.4e-26 125.2 514 69.5
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 1.4e-26 125.2 523 69.0
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 4.0e-26 123.6 522 68.0
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 5.3e-26 123.2 523 68.6
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 9.0e-26 122.5 514 68.3
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.6e-25 120.9 151 53.0
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 4.5e-25 120.2 151 53.0
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 7.6e-25 119.4 530 67.5
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.0e-24 119.0 530 67.4
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.9e-24 117.5 498 69.3
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 3.8e-24 117.1 520 69.6
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 6.5e-24 116.3 523 69.2
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.4e-23 115.2 506 68.2
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 1.4e-23 115.2 505 69.3
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 2.5e-23 114.4 525 68.8
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 3.2e-23 114.0 510 68.0
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 4.2e-23 113.6 530 68.5
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 4.2e-23 113.6 530 68.1
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 4.2e-23 113.6 516 68.4
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 9.3e-23 112.5 508 69.3
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.2e-22 112.1 510 68.6
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 1.6e-22 111.7 515 68.7
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.6e-22 110.2 472 73.1
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 4.6e-22 110.2 526 67.5
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.6e-22 110.2 524 68.7
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.6e-22 110.2 526 66.5
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 4.6e-22 110.2 526 66.5
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 4.6e-22 110.2 137 54.0
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 1.0e-21 109.0 505 69.5
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.0e-21 109.0 524 52.9
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.8e-21 108.2 511 68.9
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 3.0e-21 107.5 525 68.4
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 3.9e-21 107.1 529 67.7
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 8.7e-21 105.9 517 50.3
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.5e-20 105.1 524 67.6
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 1.9e-20 104.8 141 48.9
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 3.3e-20 104.0 526 66.5
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 3.3e-20 104.0 518 67.6
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 4.3e-20 103.6 542 65.7
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 1.6e-19 101.7 522 67.0
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.6e-19 101.7 137 49.6
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 4.8e-19 100.1 134 49.3
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 6.2e-19 99.8 527 67.4
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.8e-18 98.2 524 67.4
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 3.1e-18 97.4 155 42.6
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 5.3e-18 96.7 525 67.0
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 5.3e-18 96.7 527 66.6
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 6.9e-18 96.3 499 69.5
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 9.0e-18 95.9 146 46.6
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 1.2e-17 95.5 524 67.2
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.5e-17 95.1 498 68.5
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.0e-17 94.7 146 45.2
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 1.0e-16 92.4 147 44.9
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.7e-16 91.7 150 44.7
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.7e-16 91.7 138 45.7
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 2.9e-16 90.9 520 66.0
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 5.0e-16 90.1 137 46.7
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 6.5e-16 89.7 504 67.9
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 6.5e-16 89.7 130 48.5
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 8.4e-16 89.4 524 66.0
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 8.4e-16 89.4 494 69.4
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.1e-15 89.0 134 43.3
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 1.9e-15 88.2 523 66.0
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.9e-15 88.2 492 69.9
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.9e-15 88.2 149 47.0
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.5e-15 87.8 139 43.2
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 3.2e-15 87.4 520 66.9
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 3.2e-15 87.4 517 66.9
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 3.2e-15 87.4 148 43.2
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 7.2e-15 86.3 140 42.9
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 7.2e-15 86.3 140 42.9
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 9.3e-15 85.9 139 41.0
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 9.3e-15 85.9 126 45.2
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.2e-14 85.5 144 45.1
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.6e-14 85.1 139 42.4
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.1e-14 84.7 127 45.7
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 2.7e-14 84.3 145 44.1
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 3.5e-14 84.0 139 42.4
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 6.1e-14 83.2 526 65.2
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 6.1e-14 83.2 156 41.7
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 6.1e-14 83.2 143 44.8
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.0e-13 82.4 143 42.7
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.3e-13 82.0 148 43.2
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 1.8e-13 81.6 527 65.7
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.8e-13 81.6 140 43.6
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 1.8e-13 81.6 503 66.6
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 3.9e-13 80.5 521 66.4
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 3.9e-13 80.5 142 36.6
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 5.1e-13 80.1 145 42.8
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 6.7e-13 79.7 143 37.8
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 6.7e-13 79.7 155 40.6
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 6.7e-13 79.7 135 39.3
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.1e-12 79.0 148 41.2
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.1e-12 79.0 148 41.2
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.5e-12 77.8 124 45.2
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 3.3e-12 77.4 125 44.8
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.3e-12 77.0 139 43.2
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.3e-12 77.0 125 46.4
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 4.3e-12 77.0 148 42.6
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 4.3e-12 77.0 137 43.8
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 7.4e-12 76.3 140 41.4
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 7.4e-12 76.3 140 44.3
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 7.4e-12 76.3 125 44.0
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 9.7e-12 75.9 141 41.8
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 9.7e-12 75.9 135 40.7
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 1.6e-11 75.1 152 37.5
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 2.2e-11 74.7 144 42.4
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 2.8e-11 74.3 153 38.6
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 4.8e-11 73.6 145 42.1
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 4.8e-11 73.6 132 40.9
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 8.2e-11 72.8 144 41.0
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 8.2e-11 72.8 140 41.4
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 8.2e-11 72.8 139 39.6
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 8.2e-11 72.8 523 65.2
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 1.1e-10 72.4 70 58.6
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 1.4e-10 72.0 124 46.8
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 1.4e-10 72.0 523 65.2
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 2.4e-10 71.2 141 40.4
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 2.4e-10 71.2 141 40.4
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 4.1e-10 70.5 144 42.4
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 5.3e-10 70.1 148 41.2
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 6.9e-10 69.7 142 40.8
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 9.0e-10 69.3 143 39.9
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 1.2e-09 68.9 143 39.9
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.5e-09 68.6 142 39.4
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 1.5e-09 68.6 128 38.3
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.6e-09 67.8 145 41.4
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 2.6e-09 67.8 121 43.8
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 2.6e-09 67.8 144 41.7
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 3.4e-09 67.4 137 39.4
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 4.5e-09 67.0 143 40.6
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 4.5e-09 67.0 139 38.8
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 5.9e-09 66.6 130 39.2
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 7.7e-09 66.2 143 41.3
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 7.7e-09 66.2 136 38.2
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 1.0e-08 65.9 144 41.7
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 1.0e-08 65.9 133 33.1
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.0e-08 65.9 143 38.5
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 1.3e-08 65.5 144 40.3
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 1.3e-08 65.5 143 41.3
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 1.7e-08 65.1 95 48.4
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 1.7e-08 65.1 95 48.4
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.7e-08 65.1 119 41.2
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 2.2e-08 64.7 138 34.8
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 2.2e-08 64.7 138 34.8
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 2.2e-08 64.7 139 38.1
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.9e-08 64.3 146 40.4
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 2.9e-08 64.3 150 37.3
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 3.8e-08 63.9 127 40.2
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 5.0e-08 63.5 147 39.5
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 5.0e-08 63.5 134 39.6
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 6.5e-08 63.2 102 42.2
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 1.4e-07 62.0 138 37.7
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 1.4e-07 62.0 124 38.7
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 1.9e-07 61.6 151 33.8
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 3.2e-07 60.8 151 39.1
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 5.5e-07 60.1 144 38.9
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 7.2e-07 59.7 135 33.3
FAN08G0634 Fragaria x ananassa HOM05D003548 ORTHO05D029492 9.4e-07 59.3 100 41.0
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 9.4e-07 59.3 59 57.6
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 9.4e-07 59.3 133 39.8
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.2e-06 58.9 143 35.7
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 1.6e-06 58.5 148 37.2
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 1.6e-06 58.5 148 37.2
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 2.1e-06 58.2 149 36.9


User provided reference genes

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