Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.2e-100 369.8 182 100.0
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.4e-72 276.6 181 75.1
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 5.9e-71 271.2 171 78.4
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 1.0e-67 260.4 191 69.6
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 2.6e-66 255.8 166 74.1
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 4.1e-64 248.4 180 67.2
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 4.1e-64 248.4 180 68.9
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 2.0e-63 246.1 180 68.9
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 3.5e-63 245.4 182 67.0
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 1.1e-61 240.4 180 66.7
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.9e-61 239.6 184 66.3
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 2.5e-61 239.2 189 63.5
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 4.3e-61 238.4 190 63.2
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 4.3e-61 238.4 184 66.3
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 5.6e-61 238.0 136 83.8
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 7.3e-61 237.7 187 63.1
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 9.5e-61 237.3 176 70.5
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 1.2e-60 236.9 184 65.2
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 3.6e-60 235.3 189 64.0
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 8.0e-60 234.2 181 66.9
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 1.0e-59 233.8 181 65.2
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 1.0e-59 233.8 174 67.2
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 1.4e-59 233.4 186 64.5
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.4e-59 233.4 186 64.5
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.4e-59 233.4 189 64.6
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 1.8e-59 233.0 186 64.5
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.8e-59 233.0 187 62.6
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 2.3e-59 232.6 188 61.7
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 8.9e-59 230.7 189 65.6
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 1.5e-58 229.9 187 63.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 2.0e-58 229.6 182 65.4
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 3.4e-58 228.8 196 62.8
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 3.4e-58 228.8 185 63.2
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 3.4e-58 228.8 188 60.6
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 4.4e-58 228.4 191 63.4
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 4.4e-58 228.4 187 62.0
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 7.5e-58 227.6 187 63.6
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 7.5e-58 227.6 192 61.5
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 9.8e-58 227.3 186 63.4
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 9.8e-58 227.3 183 61.7
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 1.7e-57 226.5 184 62.0
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 1.7e-57 226.5 184 62.0
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.7e-57 226.5 184 63.6
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 2.2e-57 226.1 182 59.9
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.9e-57 225.7 189 61.9
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 3.7e-57 225.3 183 63.4
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 3.7e-57 225.3 188 63.8
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 8.3e-57 224.2 181 62.4
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.4e-56 223.4 187 62.0
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.4e-56 223.4 178 66.9
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.4e-56 223.4 179 62.6
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 2.4e-56 222.6 181 62.4
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 2.4e-56 222.6 189 62.4
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 2.4e-56 222.6 171 69.6
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 3.2e-56 222.2 185 61.1
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 4.1e-56 221.9 181 61.9
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 4.1e-56 221.9 181 61.9
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 4.1e-56 221.9 184 62.5
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 5.4e-56 221.5 186 60.2
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 9.2e-56 220.7 183 62.3
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 9.2e-56 220.7 182 62.1
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 1.6e-55 219.9 184 60.9
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 2.0e-55 219.5 187 62.0
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 7.8e-55 217.6 181 58.6
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 1.0e-54 217.2 179 60.9
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.3e-54 216.9 195 63.1
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 5.0e-54 214.9 185 60.0
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 6.6e-54 214.5 188 58.5
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 6.6e-54 214.5 177 59.9
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 1.1e-53 213.8 192 57.8
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.1e-53 213.8 192 57.8
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.5e-53 213.4 186 59.7
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 9.5e-53 210.7 192 57.3
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 1.2e-52 210.3 207 57.0
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.6e-52 209.9 186 59.1
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 3.6e-52 208.8 183 59.6
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 1.5e-50 203.4 185 59.5
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.0e-50 203.0 193 57.5
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.8e-50 201.4 192 55.7
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 9.8e-50 200.7 192 55.7
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 9.8e-50 200.7 206 55.8
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.7e-49 199.9 183 58.5
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 8.3e-49 197.6 180 59.4
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 8.3e-49 197.6 180 59.4
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.4e-48 196.8 177 57.6
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.4e-48 196.1 187 54.0
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.4e-48 196.1 187 54.0
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 1.7e-46 189.9 194 53.1
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.1e-45 187.2 184 52.2
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 1.6e-44 183.3 182 56.0
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 8.9e-43 177.6 188 53.2
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.6e-42 176.0 179 53.6
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.3e-38 163.7 183 45.4
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 1.9e-37 159.8 188 47.3
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 1.6e-36 156.8 184 48.9
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 4.7e-36 155.2 187 42.8
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 2.3e-35 152.9 175 49.1
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 4.0e-35 152.1 181 44.8
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 9.9e-34 147.5 186 45.2
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 6.9e-19 98.2 101 52.5
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.1e-16 90.9 112 45.5
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.1e-16 90.9 112 45.5
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.1e-16 90.9 85 55.3
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.4e-16 90.5 112 45.5
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.4e-16 90.5 100 47.0
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 5.4e-16 88.6 174 35.1
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 5.4e-16 88.6 174 35.1
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.1e-15 86.7 88 52.3
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 2.3e-14 83.2 106 43.4
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 3.0e-14 82.8 85 51.8
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 3.9e-14 82.4 86 51.2
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 5.1e-14 82.0 80 51.2
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 8.7e-14 81.3 87 50.6
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 1.5e-13 80.5 85 49.4
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.9e-13 80.1 99 44.4
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 4.3e-13 79.0 84 48.8
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 4.3e-13 79.0 84 47.6
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 1.6e-12 77.0 87 49.4
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 2.1e-12 76.6 85 50.6
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 2.4e-11 73.2 65 56.9
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.1e-11 72.8 107 41.1
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 1.5e-10 70.5 93 44.1
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.6e-07 60.5 63 54.0
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 2.1e-07 60.1 45 64.4
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 1.3e-06 57.4 69 44.9


User provided reference genes

Program Settings