Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 1.1e-83 314.7 149 100.0
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 2.4e-67 260.4 147 82.3
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 1.0e-65 255.0 148 79.1
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.6e-63 247.7 148 78.4
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 3.4e-61 240.0 148 73.6
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 1.3e-60 238.0 149 72.5
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 3.7e-60 236.5 147 74.8
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 2.0e-58 230.7 148 73.0
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.5e-58 229.9 147 69.4
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 1.3e-57 228.0 148 68.2
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 5.0e-57 226.1 148 66.9
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 6.5e-57 225.7 147 68.0
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 6.5e-57 225.7 148 70.3
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 3.3e-56 223.4 147 67.3
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.2e-55 221.5 148 68.9
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 3.6e-55 219.9 149 65.8
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 8.0e-55 218.8 148 66.9
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 6.8e-54 215.7 148 64.9
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.5e-53 214.5 148 66.2
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 1.5e-53 214.5 148 63.5
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 2.6e-53 213.8 148 66.2
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 2.6e-53 213.8 148 64.2
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 9.8e-53 211.8 149 65.8
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 9.8e-53 211.8 147 63.9
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.7e-52 211.1 147 64.6
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 1.7e-52 211.1 147 64.6
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 2.2e-52 210.7 148 66.9
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 2.8e-52 210.3 147 63.9
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 6.3e-52 209.1 147 63.9
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 8.3e-52 208.8 144 64.6
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 8.3e-52 208.8 147 62.6
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.4e-51 208.0 147 63.9
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 1.8e-51 207.6 143 62.9
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 1.8e-51 207.6 147 65.3
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.4e-51 207.2 148 63.5
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 4.1e-51 206.5 144 63.9
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 3.5e-50 203.4 149 61.1
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.0e-49 201.8 148 63.5
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 1.7e-49 201.1 148 63.5
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.5e-48 198.0 148 61.5
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 1.9e-48 197.6 149 60.4
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 2.5e-48 197.2 148 58.8
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 4.3e-48 196.4 149 61.7
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 7.3e-48 195.7 148 58.1
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.6e-47 194.5 148 58.8
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 3.6e-47 193.4 166 55.4
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 1.0e-46 191.8 166 54.8
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 6.8e-46 189.1 148 56.8
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 6.8e-46 189.1 140 57.9
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 1.2e-45 188.3 148 58.1
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 1.5e-45 188.0 148 59.5
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.5e-45 188.0 139 58.3
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 7.5e-45 185.7 148 54.1
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.3e-44 184.9 148 58.1
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.7e-44 184.5 149 57.0
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.2e-44 184.1 148 55.4
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 1.1e-43 181.8 148 56.1
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 1.1e-43 181.8 118 70.3
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.4e-43 181.4 148 54.1
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.4e-43 181.4 148 54.1
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.4e-43 181.4 148 52.7
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 1.8e-43 181.0 149 55.7
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 3.2e-43 180.3 147 53.7
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 9.2e-43 178.7 148 54.1
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 9.2e-43 178.7 148 54.1
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 9.2e-43 178.7 148 54.1
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 1.2e-42 178.3 146 56.2
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 2.7e-42 177.2 146 56.8
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 2.7e-42 177.2 148 52.7
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.5e-42 176.8 148 53.4
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 7.8e-42 175.6 146 56.2
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 1.7e-41 174.5 146 54.8
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-40 171.8 140 55.0
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 1.1e-40 171.8 124 61.3
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 7.3e-40 169.1 148 56.1
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 8.0e-39 165.6 167 47.3
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 5.2e-38 162.9 149 51.0
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 5.2e-38 162.9 149 51.0
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.2e-37 161.8 115 64.3
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 2.6e-37 160.6 146 51.4
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 2.6e-37 160.6 146 51.4
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 2.6e-37 160.6 145 52.4
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 3.4e-37 160.2 149 51.0
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 7.5e-37 159.1 167 45.5
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 6.4e-36 156.0 148 54.1
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 8.3e-36 155.6 152 50.0
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 2.1e-34 151.0 107 62.6
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.8e-31 140.6 107 61.7
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.1e-30 138.7 140 47.9
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 3.1e-30 137.1 122 52.5
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 4.0e-30 136.7 87 71.3
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 5.2e-30 136.3 147 46.3
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 5.2e-30 136.3 147 46.3
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.2e-29 135.2 107 55.1
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 1.5e-29 134.8 121 50.4
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 2.2e-28 131.0 121 48.8
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.9e-27 127.9 107 52.3
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 2.7e-26 124.0 148 43.9
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 4.3e-24 116.7 107 49.5
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 8.4e-20 102.4 81 56.8
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 1.4e-14 85.1 134 35.8
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 7.6e-13 79.3 128 35.2
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 1.4e-06 58.5 52 51.9
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.8e-06 58.2 43 60.5
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.8e-06 58.2 43 60.5
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 9.0e-06 55.8 42 57.1


User provided reference genes

Program Settings