Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 5.8e-294 1013.4 505 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 6.2e-235 817.4 507 82.4
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 8.9e-218 760.4 510 77.6
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 5.4e-215 751.1 505 75.6
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 5.4e-215 751.1 505 75.6
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 2.3e-213 745.7 510 75.7
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 6.4e-208 727.6 510 74.7
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 1.3e-205 719.9 502 73.7
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 3.9e-205 718.4 506 72.7
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.6e-203 711.8 509 73.3
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 2.0e-201 706.1 508 70.7
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.3e-200 703.4 505 71.7
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 6.4e-200 701.0 506 71.5
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 7.1e-199 697.6 505 70.3
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.3e-199 697.2 511 72.0
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.7e-197 690.6 511 71.6
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.5e-196 689.1 511 71.4
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-195 685.6 509 71.3
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 3.6e-195 685.3 509 70.3
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 5.3e-194 681.4 338 99.4
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 2.3e-189 666.0 500 70.2
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-187 659.8 509 69.4
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 2.4e-186 656.0 444 75.5
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.0e-185 652.9 509 68.8
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-184 649.8 511 67.9
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 2.9e-184 649.0 507 66.3
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 7.9e-182 641.0 505 66.7
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-180 636.3 510 68.0
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-180 636.3 510 68.0
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-180 636.3 510 68.0
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-180 636.3 510 68.0
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.9e-180 636.3 510 68.0
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.8e-179 632.5 498 67.5
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 1.4e-178 630.2 505 65.9
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 2.4e-178 629.4 510 63.9
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 3.1e-178 629.0 510 63.9
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 5.3e-178 628.2 510 63.9
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 5.9e-177 624.8 510 63.7
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.2e-175 617.8 511 66.1
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.6e-174 616.7 505 65.3
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-171 606.7 453 70.2
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 2.2e-171 606.3 507 63.3
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.8e-170 603.2 438 71.0
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.6e-166 590.1 507 62.5
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.6e-166 589.0 419 72.3
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 7.4e-164 581.3 509 61.9
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.6e-161 572.8 513 63.2
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.0e-160 568.5 407 72.7
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 6.1e-158 561.6 508 58.5
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.3e-157 559.7 423 69.0
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 3.0e-157 559.3 482 61.8
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 4.5e-153 545.4 509 58.7
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 1.6e-150 537.0 512 58.4
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 2.5e-143 513.1 482 59.1
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 4.1e-130 469.2 396 62.9
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 1.1e-122 444.5 396 61.4
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.2e-121 441.0 451 56.5
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.9e-120 436.0 508 52.0
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 2.5e-119 433.3 356 68.0
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-116 424.1 299 73.9
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 8.3e-115 418.3 329 66.3
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 2.6e-108 396.7 308 67.9
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 3.4e-108 396.4 462 50.4
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-105 386.7 505 47.5
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.6e-105 386.0 292 69.2
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.0e-104 383.3 431 52.4
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 9.2e-98 361.7 233 76.0
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 4.3e-87 326.2 278 66.5
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-80 304.7 213 67.6
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-80 304.7 213 67.6
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-80 304.7 213 67.6
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-80 304.7 213 67.6
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.3e-80 304.7 213 67.6
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.4e-76 290.0 264 58.7
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 3.4e-76 290.0 264 58.7
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.6e-73 281.2 182 76.4
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.8e-70 270.4 265 58.1
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.0e-68 264.2 299 53.8
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.8e-68 262.7 170 76.5
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 7.1e-66 255.8 323 47.1
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.0e-64 250.4 306 48.4
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 1.5e-63 248.1 218 62.8
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 7.4e-63 245.7 159 76.7
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 4.1e-61 240.0 144 78.5
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 6.5e-59 232.6 159 73.0
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 6.5e-59 232.6 217 59.4
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.2e-57 228.4 204 60.3
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 1.1e-55 221.9 145 75.2
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 1.5e-55 221.5 379 42.2
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 5.7e-55 219.5 246 48.8
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.7e-54 216.9 151 72.8
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 3.2e-50 203.8 122 81.1
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 5.7e-47 193.0 127 77.2
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 3.4e-44 183.7 169 60.4
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 5.9e-44 183.0 119 79.0
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 2.2e-43 181.0 127 67.7
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.8e-43 180.3 117 77.8
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 2.5e-42 177.6 134 68.7
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.5e-42 176.4 172 59.3
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 9.4e-42 175.6 120 70.8
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.7e-41 173.3 133 67.7
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.8e-40 171.4 194 50.0
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 7.4e-39 166.0 143 62.2
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 8.2e-38 162.5 113 76.1
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.6e-36 158.3 115 68.7
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 8.5e-35 152.5 143 59.4
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.5e-35 152.5 132 64.4
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.0e-32 145.6 114 60.5
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.2e-31 142.1 167 50.3
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.2e-31 142.1 102 66.7
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 2.2e-30 137.9 85 77.6
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 6.3e-30 136.3 139 56.8
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.2e-30 136.0 119 61.3
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 8.2e-30 136.0 108 66.7
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 1.4e-29 135.2 104 65.4
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.4e-29 134.4 121 57.0
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-28 132.1 111 59.5
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 2.7e-28 131.0 96 68.8
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.2e-26 123.6 407 28.3
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.2e-26 123.6 164 47.0
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.5e-26 123.2 79 75.9
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.5e-26 123.2 86 74.4
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.8e-24 116.3 115 53.9
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.2e-23 115.5 74 75.7
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.0e-23 114.8 83 69.9
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 3.4e-23 114.0 94 62.8
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 9.8e-23 112.5 84 66.7
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 8.3e-22 109.4 74 66.2
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.1e-21 109.0 391 27.9
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.3e-19 101.3 83 66.3
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.0e-16 92.4 66 68.2
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.3e-14 83.2 53 83.0
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 8.3e-14 82.8 82 50.0
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-13 81.6 68 66.2
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 4.1e-13 80.5 46 73.9
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 5.4e-13 80.1 65 66.2
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 1.6e-12 78.6 43 83.7
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 3.5e-12 77.4 84 54.8
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 4.5e-12 77.0 60 60.0
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 5.9e-12 76.6 59 62.7
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 1.3e-11 75.5 50 66.0
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.8e-11 73.9 62 58.1
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.1e-10 72.4 78 52.6
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 3.3e-10 70.9 45 71.1
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.2e-09 68.9 55 65.5
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.2e-09 68.9 55 65.5
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 1.2e-09 68.9 47 70.2
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 1.2e-09 68.9 61 62.3
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 4.0e-08 63.9 37 83.8
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 5.2e-08 63.5 58 58.6
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.4e-07 60.8 95 42.1
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 9.8e-07 59.3 40 80.0
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.7e-06 58.5 56 58.9
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 2.2e-06 58.2 78 44.9
Mapoly1406s0001 Marchantia polymorpha HOM05D004473 ORTHO05D005652 6.4e-06 56.6 57 45.6


User provided reference genes

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