Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 1.4e-48 196.4 142 100.0
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 1.0e-38 163.7 120 100.0
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 9.4e-24 114.0 106 63.2
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.2e-23 113.6 106 63.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.2e-23 113.6 106 63.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.2e-23 113.6 106 63.2
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.7e-23 112.5 106 63.2
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.7e-23 112.5 106 63.2
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.7e-23 112.5 106 63.2
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 3.6e-23 112.1 112 60.7
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.1e-23 111.3 122 59.0
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 1.0e-22 110.5 106 62.3
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 1.0e-22 110.5 106 62.3
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.4e-22 110.2 106 62.3
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 1.8e-22 109.8 106 62.3
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 3.0e-22 109.0 103 62.1
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 3.0e-22 109.0 103 62.1
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 3.0e-22 109.0 70 81.4
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 4.0e-22 108.6 76 76.3
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 4.0e-22 108.6 76 76.3
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 5.2e-22 108.2 68 80.9
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 6.8e-22 107.8 68 82.4
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 6.8e-22 107.8 122 55.7
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 6.8e-22 107.8 106 61.3
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 6.8e-22 107.8 106 61.3
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 6.8e-22 107.8 106 61.3
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 8.8e-22 107.5 122 56.6
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 8.8e-22 107.5 106 60.4
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 1.5e-21 106.7 84 71.4
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 1.5e-21 106.7 124 54.8
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 1.5e-21 106.7 84 71.4
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.5e-21 106.7 103 63.1
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.5e-21 106.7 68 82.4
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 2.0e-21 106.3 122 54.9
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 2.0e-21 106.3 122 54.9
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 2.0e-21 106.3 122 54.9
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 3.4e-21 105.5 122 55.7
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.4e-21 105.1 75 77.3
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-21 105.1 122 55.7
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 7.5e-21 104.4 96 63.5
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 9.8e-21 104.0 122 54.9
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-20 103.6 74 73.0
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 1.7e-20 103.2 83 71.1
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 3.7e-20 102.1 86 68.6
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 6.3e-20 101.3 106 58.5
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 1.8e-19 99.8 106 59.4
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.0e-19 97.8 68 76.5
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-18 97.1 122 52.5
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-18 97.1 123 52.0
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 2.0e-18 96.3 122 51.6
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.7e-18 95.9 84 64.3
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.0e-17 94.0 86 65.1
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.8e-17 92.0 67 73.1
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 5.0e-17 91.7 86 66.3
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 6.5e-17 91.3 82 68.3
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 6.5e-17 91.3 82 68.3
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.1e-15 86.3 66 71.2
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 2.8e-15 85.9 79 64.6
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.7e-15 85.1 53 86.8
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 1.0e-14 84.0 53 84.9
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 1.4e-14 83.6 60 73.3
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 8.9e-14 80.9 53 83.0
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-13 80.5 69 69.6
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-13 80.5 69 69.6
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-13 80.5 69 69.6
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 2.0e-13 79.7 53 84.9
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-13 78.6 69 69.6
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-13 78.6 69 69.6
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.3e-12 77.0 53 81.1
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.7e-12 76.6 53 79.2
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 6.3e-12 74.7 53 77.4
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.4e-11 73.6 44 81.8
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 1.8e-11 73.2 81 53.1
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 9.2e-11 70.9 75 58.7
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 1.6e-10 70.1 80 52.5
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 5.6e-08 61.6 41 75.6
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 7.3e-08 61.2 42 73.8
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 9.5e-08 60.8 72 50.0
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 1.2e-07 60.5 40 82.5
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 2.1e-07 59.7 77 48.1
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 5.2e-06 55.1 84 42.9
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 5.2e-06 55.1 32 78.1


User provided reference genes

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