Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 1.8e-88 329.3 177 100.0
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 1.8e-88 329.3 177 100.0
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 4.4e-87 324.7 177 98.3
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 4.2e-82 308.1 177 92.1
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 6.8e-80 300.8 177 89.8
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 4.4e-79 298.1 177 88.1
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 89.3
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 89.3
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 89.3
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 89.3
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 89.3
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 89.3
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-78 295.4 177 89.3
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 4.9e-78 294.7 177 88.7
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 4.9e-78 294.7 177 88.7
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 4.9e-78 294.7 177 88.7
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.2e-77 292.0 177 87.6
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.2e-77 292.0 177 87.6
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.2e-77 292.0 177 87.6
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 3.2e-77 292.0 177 87.6
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 7.0e-77 290.8 177 87.6
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.8e-76 287.3 177 86.4
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 7.8e-76 287.3 177 86.4
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 7.8e-76 287.3 177 86.4
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.0e-75 287.0 177 86.4
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 1.5e-74 283.1 177 84.7
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 3.3e-74 282.0 177 84.7
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 9.5e-74 280.4 177 84.2
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 1.2e-73 280.0 177 84.7
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 2.8e-73 278.9 177 83.6
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 8.0e-73 277.3 177 84.7
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 3.4e-71 271.9 176 82.4
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 7.5e-71 270.8 177 80.8
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 9.8e-71 270.4 177 80.2
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.3e-70 270.0 176 81.8
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 2.2e-70 269.2 177 81.9
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 2.2e-70 269.2 177 83.6
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 1.4e-69 266.5 177 79.7
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.4e-69 266.5 177 80.8
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 4.6e-68 261.5 162 86.4
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 1.3e-67 260.0 177 77.4
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 8.6e-67 257.3 153 86.9
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 2.8e-65 252.3 176 79.0
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 4.0e-64 248.4 162 80.9
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.9e-59 231.9 152 81.6
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 3.1e-56 222.2 136 86.0
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 2.0e-55 219.5 141 82.3
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.3e-50 202.2 160 71.9
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 1.5e-47 193.4 150 73.3
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 6.0e-44 181.4 118 79.7
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 7.8e-44 181.0 124 77.4
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 3.9e-43 178.7 119 81.5
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 1.4e-40 170.2 99 85.9
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-40 169.9 117 75.2
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.0e-39 166.4 99 82.8
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 9.9e-39 164.1 108 79.6
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 4.9e-38 161.8 107 79.4
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 4.9e-38 161.8 107 79.4
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 4.9e-38 161.8 107 79.4
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 4.9e-38 161.8 107 79.4
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 7.1e-37 157.9 99 79.8
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 2.1e-36 156.4 153 66.0
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.3e-35 152.9 170 55.9
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 1.9e-34 149.8 177 56.5
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 7.3e-34 147.9 99 74.7
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-33 146.4 99 80.8
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 6.2e-33 144.8 98 77.6
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 4.0e-32 142.1 128 60.9
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 2.0e-31 139.8 93 74.2
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 7.6e-31 137.9 84 91.7
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 1.7e-30 136.7 94 72.3
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 4.9e-30 135.2 84 86.9
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 6.4e-30 134.8 100 72.0
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-29 134.0 74 85.1
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-29 134.0 74 85.1
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.1e-28 129.8 96 68.8
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 2.1e-28 129.8 90 82.2
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 3.5e-28 129.0 109 67.9
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.0e-27 127.5 76 85.5
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 3.9e-27 125.6 75 93.3
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 4.8e-25 118.6 84 77.4
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 6.9e-24 114.8 67 76.1
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.0e-23 113.2 74 79.7
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.0e-23 113.2 74 79.7
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.0e-23 113.2 74 79.7
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 1.4e-21 107.1 75 66.7
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 1.4e-21 107.1 60 90.0
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 2.5e-21 106.3 83 74.7
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 1.1e-18 97.4 180 42.8
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 4.3e-18 95.5 65 78.5
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 2.1e-17 93.2 56 82.1
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-15 86.3 81 69.1
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 2.6e-15 86.3 48 93.8
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-13 80.9 61 75.4
Aa31LG5G21710 Aethionema arabicum HOM05D007371 ORTHO05D009319 9.3e-13 77.8 85 60.0
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 2.3e-11 73.2 99 41.4
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 6.3e-09 65.1 43 79.1
Lalb_Chr11g0071331 Lupinus albus HOM05D007371 ORTHO05D009319 1.4e-08 63.9 70 55.7
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 2.2e-06 56.6 41 65.9
Haze_02268 Corylus avellana HOM05D007371 ORTHO05D009319 3.8e-06 55.8 42 71.4


User provided reference genes

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