Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 3.8e-106 388.3 206 100.0
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 3.8e-106 388.3 206 100.0
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 7.3e-102 374.0 204 98.0
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.3e-101 373.2 206 96.1
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 2.8e-101 372.1 206 96.6
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 2.8e-101 372.1 206 96.6
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 2.8e-101 372.1 206 96.6
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 2.8e-101 372.1 206 96.6
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 2.8e-101 372.1 206 96.6
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 2.8e-101 372.1 206 96.6
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 9.0e-100 367.1 202 97.5
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 9.0e-100 367.1 202 97.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 2.0e-99 365.9 203 96.6
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.0e-99 365.9 203 96.6
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 3.4e-99 365.2 206 94.7
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 1.3e-98 363.2 202 96.0
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 1.3e-98 363.2 202 96.0
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 2.9e-98 362.1 204 94.6
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 2.9e-98 362.1 204 94.6
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 2.9e-98 362.1 204 94.6
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-98 362.1 206 93.7
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-98 362.1 206 93.7
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-98 362.1 206 93.7
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 2.9e-98 362.1 206 93.7
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 2.9e-98 362.1 203 95.6
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.1e-97 360.1 206 93.7
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 6.0e-96 354.4 203 93.6
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 6.0e-96 354.4 203 93.6
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 6.0e-96 354.4 203 93.6
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 6.0e-96 354.4 198 96.0
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.3e-95 353.2 200 94.5
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 8.7e-95 350.5 200 94.0
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 4.3e-94 348.2 205 92.7
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 2.8e-93 345.5 207 90.3
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 2.8e-93 345.5 207 90.3
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 3.7e-93 345.1 205 92.2
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 8.1e-93 344.0 207 89.9
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.8e-91 337.8 203 89.2
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.6e-91 337.4 203 88.2
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 4.9e-90 334.7 183 97.3
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 4.9e-90 334.7 203 88.7
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 5.5e-89 331.3 187 94.7
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 7.9e-88 327.4 194 90.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.0e-87 325.5 203 86.7
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 1.1e-86 323.6 176 97.7
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 3.9e-79 298.5 204 80.9
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 6.7e-79 297.7 198 83.8
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.7e-79 297.7 203 83.3
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 4.8e-77 291.6 180 87.2
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 5.3e-76 288.1 200 81.5
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.7e-72 275.8 203 78.8
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 8.2e-69 264.2 140 98.6
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 9.1e-68 260.8 155 89.7
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 2.0e-67 259.6 148 91.9
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.7e-67 257.7 176 82.4
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 8.2e-61 237.7 130 96.9
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 2.2e-58 229.6 130 95.4
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.9e-57 226.5 149 81.2
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 5.2e-55 218.4 124 93.5
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 2.2e-53 213.0 117 95.7
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 9.1e-52 207.6 184 64.1
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 6.1e-48 194.9 197 63.5
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 1.1e-44 184.1 103 96.1
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 1.4e-44 183.7 100 94.0
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 2.9e-42 176.0 115 83.5
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.7e-37 159.1 184 58.7
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 2.4e-36 156.4 95 93.7
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.9e-34 149.4 89 93.3
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 5.0e-34 148.7 88 94.3
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 3.3e-33 146.0 84 91.7
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-28 130.2 174 53.4
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 2.0e-27 126.7 69 97.1
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 8.6e-26 121.3 93 72.0
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.3e-23 113.2 131 58.8
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.2e-21 106.7 64 79.7
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.9e-21 106.3 61 88.5
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.1e-20 104.4 57 84.2
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 3.9e-18 95.9 57 93.0
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.5e-17 94.0 71 83.1
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.2e-16 90.9 64 76.6
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.8e-15 85.1 63 79.4
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 5.8e-14 82.0 44 97.7
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 3.2e-12 76.3 89 60.7
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 1.2e-11 74.3 37 97.3
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-10 71.2 37 94.6
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-10 71.2 37 94.6
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 1.1e-07 61.2 40 82.5


User provided reference genes

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