Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 1.1e-75 286.6 143 100.0
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 7.7e-58 227.3 248 54.8
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 4.2e-56 221.5 248 54.4
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.7e-55 218.8 248 52.8
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 1.0e-54 216.9 241 53.9
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.3e-54 215.7 248 52.4
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 5.2e-54 214.5 248 52.8
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 5.2e-54 214.5 248 52.8
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-52 209.9 117 89.7
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 4.8e-52 208.0 248 52.0
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 6.3e-52 207.6 245 52.2
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-48 196.8 246 49.6
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 1.5e-48 196.4 209 56.5
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 1.6e-47 193.0 179 61.5
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 7.5e-45 184.1 210 54.8
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 2.4e-43 179.1 91 95.6
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.2e-42 176.8 92 94.6
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 2.7e-42 175.6 213 51.6
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 3.5e-42 175.3 206 51.5
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 3.5e-42 175.3 206 51.5
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 3.5e-42 175.3 186 56.5
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 2.9e-41 172.2 206 51.0
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 6.5e-41 171.0 89 94.4
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 4.2e-40 168.3 239 46.9
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 4.2e-40 168.3 208 51.0
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 5.5e-40 167.9 92 91.3
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 7.2e-40 167.5 239 46.9
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 1.2e-39 166.8 239 46.9
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 2.1e-39 166.0 246 44.7
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 5.2e-38 161.4 91 87.9
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 4.4e-37 158.3 246 43.1
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 1.3e-36 156.8 215 46.5
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 2.2e-36 156.0 239 43.9
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 2.2e-36 156.0 239 43.9
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 2.2e-36 156.0 239 43.9
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 2.2e-36 156.0 239 43.9
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 2.2e-36 156.0 239 43.9
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 2.8e-36 155.6 240 43.8
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 6.3e-36 154.5 239 43.9
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 6.3e-36 154.5 239 43.9
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 6.3e-36 154.5 239 43.9
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 6.3e-36 154.5 239 43.9
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 6.3e-36 154.5 239 43.9
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 6.3e-36 154.5 91 86.8
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 1.4e-35 153.3 240 43.3
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 2.4e-35 152.5 99 81.8
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 1.2e-34 150.2 92 81.5
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 1.6e-34 149.8 92 83.7
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 5.9e-34 147.9 91 81.3
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 9.5e-32 140.6 247 40.9
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 1.2e-31 140.2 79 88.6
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.8e-31 139.0 85 82.4
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 4.7e-31 138.3 247 40.5
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 1.0e-30 137.1 90 75.6
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 3.0e-30 135.6 239 41.4
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 9.8e-29 130.6 84 76.2
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 9.8e-29 130.6 207 45.4
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 1.8e-27 126.3 92 72.8
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 6.0e-26 121.3 70 82.9
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 7.8e-26 120.9 63 93.7
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.7e-25 119.8 231 39.0
SHI27524 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-23 113.6 110 60.0
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 2.8e-23 112.5 72 79.2
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-23 111.7 200 38.5
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 8.0e-23 110.9 74 79.7
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 1.1e-22 110.5 70 78.6
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.2e-20 102.8 87 64.4
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.1e-19 100.5 141 44.0
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 3.2e-19 99.0 54 88.9
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 4.1e-19 98.6 51 96.1
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 2.1e-18 96.3 57 77.2
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 2.1e-18 96.3 51 94.1
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 3.5e-18 95.5 57 77.2
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 3.9e-17 92.0 60 75.0
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 9.5e-16 87.4 50 86.0
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 9.5e-16 87.4 50 86.0
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 1.6e-15 86.7 49 85.7
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.8e-14 83.2 47 85.1
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-14 83.2 45 88.9
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 4.0e-14 82.0 47 85.1
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 6.8e-14 81.3 45 91.1
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-13 80.5 46 82.6
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 2.0e-13 79.7 47 83.0
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 2.0e-13 79.7 47 83.0
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 2.6e-13 79.3 44 88.6
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.6e-13 79.3 40 97.5
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 3.4e-13 79.0 42 90.5
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 5.8e-13 78.2 59 71.2
Medtr8g077470 Medicago truncatula HOM05D006604 ORTHO05D007974 1.3e-12 77.0 50 74.0
SHI37140 Sapria himalayana HOM05D006604 ORTHO05D007974 6.4e-12 74.7 45 77.8
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 5.4e-11 71.6 46 78.3
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 7.1e-11 71.2 47 78.7
SHI36463 Sapria himalayana HOM05D006604 ORTHO05D007974 9.2e-11 70.9 43 79.1
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 4.6e-10 68.6 56 55.4
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-09 67.0 49 75.5
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 5.1e-09 65.1 42 81.0
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 3.3e-08 62.4 34 88.2
ClCG07G016010 Citrullus lanatus HOM05D006604 ORTHO05D007974 4.3e-08 62.0 34 85.3
SHI36366 Sapria himalayana HOM05D006604 ORTHO05D007974 4.3e-08 62.0 32 93.8
SHI12053 Sapria himalayana HOM05D006604 ORTHO05D007974 7.3e-08 61.2 42 76.2
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.2e-07 60.5 29 100.0
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 1.6e-07 60.1 68 50.0
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 2.1e-07 59.7 33 90.9
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 2.1e-07 59.7 33 90.9
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 6.2e-07 58.2 42 69.0
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 8.1e-07 57.8 34 85.3
SHI36696 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-06 57.4 28 96.4
SHI37563 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-06 57.4 30 90.0
SHI50563 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-06 57.4 28 96.4
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 2.4e-06 56.2 36 80.6
MELO3C000965.2 Cucumis melo HOM05D006604 ORTHO05D007974 5.2e-06 55.1 33 84.8


User provided reference genes

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