Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 8.0e-85 317.0 155 100.0
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.3e-71 272.3 136 97.8
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.3e-71 272.3 136 97.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 8.6e-71 270.4 136 97.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.3e-70 268.5 136 97.1
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.3e-70 268.5 136 97.1
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.8e-69 265.4 136 95.6
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.8e-69 265.4 136 95.6
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.6e-69 265.0 135 96.3
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 6.2e-69 264.2 136 95.6
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.2e-69 264.2 136 95.6
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 8.0e-69 263.8 136 96.3
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 8.0e-69 263.8 136 96.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 8.0e-69 263.8 137 96.4
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.1e-68 263.5 136 94.9
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 3.1e-68 261.9 136 94.9
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 3.1e-68 261.9 136 94.9
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.2e-68 261.2 136 94.9
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 6.8e-68 260.8 136 94.9
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-67 260.0 136 94.1
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.2e-67 260.0 135 94.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.0e-67 259.2 132 96.2
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.0e-67 259.2 136 93.4
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 9.8e-67 256.9 132 95.5
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 9.8e-67 256.9 132 95.5
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 9.8e-67 256.9 132 95.5
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 9.8e-67 256.9 132 95.5
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.3e-66 256.5 136 94.1
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.3e-66 256.5 136 93.4
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-66 255.8 147 87.1
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.9e-66 255.4 136 93.4
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.7e-66 255.0 131 94.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 4.9e-66 254.6 136 92.6
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-65 252.3 132 92.4
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.6e-64 248.1 126 96.8
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.6e-64 248.1 126 96.8
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.6e-64 248.1 126 96.8
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.0e-63 246.9 135 90.4
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.5e-62 243.0 132 91.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.5e-62 242.3 132 90.9
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.6e-62 241.1 132 91.7
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.1e-61 239.2 135 88.9
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.1e-61 239.2 135 88.9
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.1e-61 239.2 135 88.9
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.1e-61 239.2 135 88.9
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.1e-61 239.2 135 88.9
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.1e-61 239.2 135 88.9
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.8e-61 238.8 148 81.8
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-60 236.9 126 92.9
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.3e-60 235.7 136 88.2
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 6.8e-60 234.2 124 95.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.8e-59 231.1 136 86.0
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.4e-57 226.5 136 84.6
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 9.2e-57 223.8 123 88.6
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.1e-56 222.6 124 89.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.6e-55 217.2 123 89.4
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.1e-54 216.9 134 83.6
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.1e-52 210.3 132 78.8
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.5e-51 206.5 106 94.3
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.6e-51 205.7 112 89.3
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.4e-51 205.3 132 80.3
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 9.9e-51 203.8 112 90.2
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 3.8e-50 201.8 108 94.4
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 8.4e-50 200.7 106 91.5
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.6e-48 196.4 103 92.2
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 2.1e-48 196.1 117 87.2
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 2.7e-48 195.7 103 92.2
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 4.6e-48 194.9 100 94.0
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 1.3e-47 193.4 104 93.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 5.1e-47 191.4 129 74.4
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.1e-47 191.4 129 74.4
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-46 190.3 99 92.9
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 1.5e-46 189.9 114 83.3
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 4.3e-46 188.3 113 85.0
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 5.6e-46 188.0 114 83.3
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.3e-45 186.8 103 88.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.8e-45 184.9 106 89.6
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-43 180.3 93 92.5
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-38 163.3 109 76.1
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 3.1e-36 155.6 91 85.7
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 3.1e-36 155.6 76 96.1
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 3.9e-31 138.7 114 64.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.3e-29 133.7 101 70.3
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.7e-29 132.1 100 70.0
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 4.0e-28 128.6 96 69.8
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-27 126.7 100 68.0
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-27 126.7 100 68.0
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-27 125.9 66 92.4
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 6.5e-26 121.3 58 96.6
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 9.3e-25 117.5 58 93.1
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 3.5e-24 115.5 57 94.7
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 3.0e-23 112.5 66 83.3
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 3.3e-22 109.0 123 48.8
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-17 93.6 45 95.6
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-17 93.6 136 42.6
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.0e-15 85.9 53 86.8
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-14 84.0 49 83.7
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-14 83.6 51 72.5
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.2e-10 69.7 93 48.4
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-09 67.0 45 75.6
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.2e-09 65.5 38 84.2
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 7.2e-09 64.7 73 52.1
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-07 60.8 126 34.9


User provided reference genes

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