Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.2e-101 373.2 193 100.0
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.2e-101 373.2 193 100.0
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.2e-101 373.2 193 100.0
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 2.7e-98 362.1 193 97.9
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 5.1e-97 357.8 189 98.4
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 3.7e-95 351.7 190 96.3
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 3.7e-95 351.7 190 96.3
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 9.0e-94 347.1 191 95.3
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 7.6e-93 344.0 190 94.2
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.3e-92 343.2 189 96.3
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.3e-92 343.2 189 96.3
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 1.3e-92 343.2 189 96.3
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.1e-91 340.1 189 95.8
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.5e-91 339.0 190 93.2
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 4.2e-91 338.2 187 94.1
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 4.2e-91 338.2 192 93.2
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.1e-91 337.4 190 92.6
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 3.5e-90 335.1 190 93.7
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 7.9e-90 334.0 190 91.6
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 3.0e-89 332.0 182 94.0
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 5.1e-89 331.3 190 92.6
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 9.6e-88 327.0 190 90.5
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 9.6e-88 327.0 190 90.5
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 2.8e-87 325.5 180 94.4
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 2.4e-86 322.4 165 100.0
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 3.1e-86 322.0 190 88.9
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.6e-85 318.9 189 88.9
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.6e-85 318.9 189 88.9
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 1.3e-84 316.6 166 97.6
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-83 313.5 189 87.3
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 5.5e-83 311.2 193 86.5
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 7.1e-83 310.8 183 89.1
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 7.1e-83 310.8 183 89.1
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.0e-81 307.0 190 86.3
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 5.1e-81 304.7 193 85.0
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-80 303.5 189 86.8
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-80 303.5 189 86.8
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.9e-80 302.8 193 84.5
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 1.3e-79 300.1 179 85.5
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 6.3e-79 297.7 174 89.1
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 6.3e-79 297.7 174 89.1
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 2.0e-77 292.7 189 82.5
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.0e-77 292.7 190 84.7
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.0e-77 292.7 190 84.7
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 2.6e-77 292.4 180 85.0
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-72 276.9 171 85.4
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 2.0e-72 276.2 155 93.5
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.7e-72 274.6 159 90.6
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.8e-71 272.3 147 94.6
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.4e-70 270.0 152 93.4
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.0e-69 266.2 149 93.3
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.0e-69 266.2 149 93.3
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 2.5e-67 259.2 145 93.8
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 2.7e-66 255.8 146 89.7
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 4.4e-64 248.4 145 87.6
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 1.1e-62 243.8 131 94.7
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 5.9e-61 238.0 140 88.6
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 1.1e-59 233.8 135 88.9
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 2.5e-59 232.6 140 85.7
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 9.4e-59 230.7 185 71.4
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 9.4e-59 230.7 185 71.4
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 9.4e-59 230.7 185 71.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.0e-57 227.3 120 96.7
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 1.0e-57 227.3 120 96.7
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-57 226.9 140 82.9
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 5.2e-57 224.9 185 69.2
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 2.6e-56 222.6 141 85.1
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.8e-55 218.4 187 67.9
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 4.1e-54 215.3 149 78.5
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 5.9e-53 211.5 132 84.1
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 5.9e-53 211.5 132 84.1
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 3.8e-52 208.8 133 79.7
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 6.5e-52 208.0 109 97.2
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.6e-50 203.4 109 96.3
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 5.7e-48 194.9 114 87.7
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.7e-48 194.1 123 81.3
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 1.1e-46 190.7 101 94.1
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 2.2e-44 183.0 115 86.1
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 9.8e-40 167.5 97 92.8
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 1.3e-39 167.2 98 86.7
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 2.2e-39 166.4 99 87.9
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 1.6e-37 160.2 89 91.0
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 1.2e-34 150.6 86 91.9
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.8e-34 149.4 88 90.9
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 3.6e-34 149.1 81 95.1
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 5.2e-33 145.2 84 89.3
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 4.1e-30 135.6 75 94.7
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 2.3e-28 129.8 73 90.4
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-27 125.2 76 84.2
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 4.7e-26 122.1 65 92.3
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 6.1e-26 121.7 163 49.1
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.4e-24 115.5 79 74.7
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 7.5e-24 114.8 74 81.1
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 7.5e-24 114.8 74 81.1
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 4.1e-22 109.0 64 89.1
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 6.0e-21 105.1 70 80.0
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.0e-20 104.4 65 80.0
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.0e-20 102.8 68 83.8
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 3.9e-20 102.4 97 68.0
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 5.0e-20 102.1 61 83.6
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 1.6e-13 80.5 43 90.7
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.6e-13 79.0 81 56.8
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 6.6e-12 75.1 43 93.0
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.2e-10 70.9 36 94.4
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.1e-10 70.1 53 67.9
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-09 67.8 43 74.4
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 6.8e-09 65.1 39 79.5
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 1.5e-08 63.9 59 64.4
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 2.2e-07 60.1 38 86.8


User provided reference genes

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