Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 8.4e-88 327.0 168 100.0
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.6e-86 322.8 165 100.0
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.6e-86 322.8 165 100.0
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.6e-86 322.8 165 100.0
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 2.5e-84 315.5 165 98.2
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 4.3e-84 314.7 165 98.2
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 9.6e-84 313.5 165 97.6
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 6.9e-82 307.4 165 95.8
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.5e-81 306.2 165 97.0
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.5e-81 306.2 165 97.0
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.0e-81 305.8 165 95.8
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.0e-81 305.8 165 95.8
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 7.6e-81 303.9 165 96.4
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.3e-80 303.1 165 96.4
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 3.8e-80 301.6 165 93.9
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.1e-79 300.1 165 95.2
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 5.5e-79 297.7 162 94.4
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.2e-78 296.6 165 93.3
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.5e-78 295.0 165 92.7
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.0e-77 293.5 165 93.3
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 1.0e-77 293.5 164 93.3
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 1.0e-77 293.5 164 93.3
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 5.1e-77 291.2 158 94.9
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 6.7e-77 290.8 165 90.9
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 1.9e-76 289.3 165 92.7
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 1.9e-76 289.3 165 92.1
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 3.3e-76 288.5 164 91.5
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.3e-76 288.5 164 91.5
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.3e-76 288.5 164 91.5
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.4e-74 283.1 164 89.6
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 5.3e-74 281.2 157 92.4
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 5.3e-74 281.2 157 92.4
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 6.9e-74 280.8 157 92.4
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 6.9e-74 280.8 157 92.4
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 4.5e-73 278.1 162 90.1
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 5.8e-73 277.7 162 90.1
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.0e-72 276.9 162 89.5
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.7e-72 276.2 155 93.5
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 3.8e-72 275.0 165 84.8
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 1.4e-71 273.1 164 89.0
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 1.4e-71 273.1 164 89.0
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.9e-71 272.7 162 88.3
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.5e-71 272.3 168 87.5
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.3e-69 266.5 153 90.8
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.8e-69 266.2 149 93.3
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.8e-69 266.2 149 93.3
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 5.1e-69 264.6 155 87.7
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 2.5e-68 262.3 164 84.1
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.6e-67 259.6 145 93.8
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.8e-66 256.1 146 89.7
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.4e-66 255.8 164 85.4
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.4e-66 255.8 164 85.4
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-64 250.0 148 87.8
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 7.2e-63 244.2 131 94.7
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 9.7e-60 233.8 135 88.9
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.8e-59 232.3 122 95.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 9.0e-58 227.3 120 96.7
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 9.0e-58 227.3 120 96.7
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 7.2e-55 217.6 120 90.8
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 2.3e-53 212.6 162 73.5
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 2.3e-53 212.6 162 73.5
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 2.3e-53 212.6 162 73.5
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.7e-52 208.0 109 97.2
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 1.3e-51 206.8 162 71.0
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 1.3e-51 206.8 108 95.4
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 6.3e-51 204.5 115 89.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.4e-50 203.4 109 96.3
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.2e-48 196.1 113 85.8
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.4e-47 193.4 126 81.7
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.4e-47 193.4 109 89.9
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.4e-47 193.4 109 89.9
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 5.5e-47 191.4 101 94.1
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.2e-47 191.0 164 67.7
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 3.0e-45 185.7 115 86.1
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 2.0e-44 183.0 115 86.1
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 4.4e-44 181.8 108 84.3
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 8.5e-40 167.5 97 92.8
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 1.1e-39 167.2 98 86.7
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 1.9e-39 166.4 99 87.9
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.6e-38 163.3 98 83.7
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 6.1e-38 161.4 88 92.0
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 1.4e-37 160.2 89 91.0
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 1.1e-34 150.6 86 91.9
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.4e-34 149.4 88 90.9
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 4.5e-33 145.2 84 89.3
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 3.6e-30 135.6 75 94.7
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 5.4e-26 121.7 163 49.1
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 6.5e-24 114.8 74 81.1
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 6.5e-24 114.8 74 81.1
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 4.2e-23 112.1 57 96.5
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 3.6e-22 109.0 64 89.1
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 4.7e-22 108.6 57 94.7
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 8.0e-22 107.8 56 92.9
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.2e-21 105.1 70 80.0
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 8.8e-21 104.4 65 80.0
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.6e-20 102.8 68 83.8
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 3.4e-20 102.4 97 68.0
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 7.5e-20 101.3 49 100.0
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-17 92.8 57 82.5
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.7e-16 90.1 56 76.8
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 5.7e-12 75.1 43 93.0
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-10 70.9 36 94.4
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 9.2e-10 67.8 43 74.4
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 5.9e-09 65.1 39 79.5
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 1.3e-08 63.9 59 64.4
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 1.9e-07 60.1 38 86.8


User provided reference genes

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