Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1171T5 Lonicera japonica HOM05D008338 ORTHO05D000921 7.2e-92 340.5 165 100.0
Lj1A366G18 Lonicera japonica HOM05D008338 ORTHO05D000921 5.8e-57 224.6 135 81.5
Lju1319C4G9 Lonicera japonica HOM05D008338 ORTHO05D000921 4.9e-56 221.5 135 80.7
Lj7A726T26 Lonicera japonica HOM05D008338 ORTHO05D000921 3.9e-53 211.8 129 80.6
Lj7A576T77 Lonicera japonica HOM05D008338 ORTHO05D000921 2.0e-49 199.5 129 77.5
Lj7A99T40 Lonicera japonica HOM05D008338 ORTHO05D000921 9.8e-49 197.2 138 69.6
Lj4C727T6 Lonicera japonica HOM05D008338 ORTHO05D000921 1.3e-48 196.8 129 76.7
Lju1040A2T29 Lonicera japonica HOM05D008338 ORTHO05D000921 4.9e-48 194.9 129 75.2
Lj3A995G65 Lonicera japonica HOM05D008338 ORTHO05D000921 5.1e-45 184.9 129 69.0
Lj4A464T6 Lonicera japonica HOM05D008338 ORTHO05D000921 7.3e-44 181.0 129 69.0
Lj4P771T23 Lonicera japonica HOM05D008338 ORTHO05D000921 9.5e-44 180.6 106 85.8
Lj9A689T48 Lonicera japonica HOM05D008338 ORTHO05D000921 5.2e-42 174.9 114 77.2
Lj4A312T9 Lonicera japonica HOM05D008338 ORTHO05D000921 7.8e-38 161.0 132 65.2
Lj7A613T70 Lonicera japonica HOM05D008338 ORTHO05D000921 6.6e-37 157.9 91 82.4
Lj2P419T27 Lonicera japonica HOM05D008338 ORTHO05D000921 1.1e-36 157.1 109 73.4
Lj7A78G56 Lonicera japonica HOM05D008338 ORTHO05D000921 2.1e-35 152.9 100 71.0
Lj2A483T24 Lonicera japonica HOM05D008338 ORTHO05D000921 1.5e-33 146.7 109 69.7
Lj9P576T20 Lonicera japonica HOM05D008338 ORTHO05D000921 9.9e-33 144.1 117 62.4
Lj5A412T16 Lonicera japonica HOM05D008338 ORTHO05D000921 6.4e-32 141.4 90 76.7
Lj2A609T18 Lonicera japonica HOM05D008338 ORTHO05D000921 8.4e-32 141.0 91 76.9
Lj2C925G1 Lonicera japonica HOM05D008338 ORTHO05D000921 2.7e-30 136.0 129 57.4
Lj5A436T25 Lonicera japonica HOM05D008338 ORTHO05D000921 1.6e-27 126.7 77 80.5
Lj4P890T11 Lonicera japonica HOM05D008338 ORTHO05D000921 3.6e-27 125.6 84 75.0
Lj2A728G9 Lonicera japonica HOM05D008338 ORTHO05D000921 8.1e-27 124.4 91 65.9
Lj1A889T103 Lonicera japonica HOM05D008338 ORTHO05D000921 5.8e-25 118.2 69 82.6
Lj1P813T6 Lonicera japonica HOM05D008338 ORTHO05D000921 8.7e-21 104.4 70 71.4
Lj4A628T58 Lonicera japonica HOM05D008338 ORTHO05D000921 2.1e-19 99.8 71 67.6
Lj5A414T29 Lonicera japonica HOM05D008338 ORTHO05D000921 2.6e-17 92.8 73 63.0
Lj7A451G35 Lonicera japonica HOM05D008338 ORTHO05D000921 4.5e-17 92.0 58 75.9
Dinv33374 Davidia involucrata HOM05D008473 ORTHO05D000921 1.3e-16 90.5 99 44.4
RcHm_v2.0_Chr1g0354771 Rosa chinensis HOM05D003171 ORTHO05D000921 1.3e-16 90.5 112 42.9
Ciclev10006620m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.7e-16 90.1 113 40.7
CSS0007117 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 2.2e-16 89.7 118 39.8
TWI38G2389 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 2.2e-16 89.7 113 41.6
Lj2A1212T63 Lonicera japonica HOM05D008338 ORTHO05D000921 3.2e-15 85.9 54 77.8
Lj9A361G54 Lonicera japonica HOM05D008338 ORTHO05D000921 4.2e-15 85.5 89 51.7
FvH4_7g00340 Fragaria vesca HOM05D003171 ORTHO05D000921 3.5e-14 82.4 101 43.6
Lj3A649T63 Lonicera japonica HOM05D008338 ORTHO05D000921 3.5e-14 82.4 67 64.2
CSS0031995 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 1.0e-13 80.9 120 37.5
Lj1C822T3 Lonicera japonica HOM05D008338 ORTHO05D000921 2.3e-13 79.7 51 74.5
CANSAT54G0360 Cannabis sativa HOM05D000665 ORTHO05D000921 8.7e-13 77.8 111 33.3
PSO832G2613 Papaver somniferum HOM05D003171 ORTHO05D000921 1.1e-12 77.4 121 33.1
Prupe.6G193000 Prunus persica HOM05D003171 ORTHO05D000921 1.9e-12 76.6 80 47.5
Prupe.7G061200 Prunus persica HOM05D003171 ORTHO05D000921 1.9e-12 76.6 111 37.8
Ciclev10018241m.g Citrus clementina HOM05D003171 ORTHO05D000921 3.3e-12 75.9 113 36.3
TWI36G0176 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 3.3e-12 75.9 84 45.2
Dinv05111 Davidia involucrata HOM05D008473 ORTHO05D000921 4.3e-12 75.5 112 38.4
CANSAT35G1351 Cannabis sativa HOM05D000665 ORTHO05D000921 7.4e-12 74.7 106 34.0
Lj2C391G3 Lonicera japonica HOM05D008338 ORTHO05D000921 9.6e-12 74.3 128 39.8
FAN06G0566 Fragaria x ananassa HOM05D003171 ORTHO05D000921 1.3e-11 73.9 113 40.7
TWI34G0686 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 1.3e-11 73.9 84 42.9
Dinv03278 Davidia involucrata HOM05D008473 ORTHO05D000921 2.8e-11 72.8 77 46.8
CANSAT01G0669 Cannabis sativa HOM05D000665 ORTHO05D000921 3.7e-11 72.4 108 33.3
Hma1.2p1_1940F.1_g308350 Hydrangea macrophylla HOM05D003171 ORTHO05D000921 3.7e-11 72.4 119 34.5
FvH4_4g13820 Fragaria vesca HOM05D003171 ORTHO05D000921 6.2e-11 71.6 80 46.2
Hma1.2p1_0805F.1_g221293 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 8.1e-11 71.2 122 35.2
Hma1.2p1_0805F.1_g221299 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 8.1e-11 71.2 122 35.2
CSS0006884 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 1.1e-10 70.9 99 37.4
Dinv06146 Davidia involucrata HOM05D003171 ORTHO05D000921 1.1e-10 70.9 89 43.8
Dinv32776 Davidia involucrata HOM05D007209 ORTHO05D000921 1.1e-10 70.9 110 34.5
Hma1.2p1_0471F.1_g159430 Hydrangea macrophylla HOM05D003171 ORTHO05D000921 1.1e-10 70.9 119 35.3
CSS0009073 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.4e-10 70.5 123 30.9
Medtr3g065345 Medicago truncatula HOM05D008338 ORTHO05D000921 1.4e-10 70.5 71 46.5
QL01p020889 Quercus lobata HOM05D000665 ORTHO05D000921 1.8e-10 70.1 121 33.1
Lj8A133T59 Lonicera japonica HOM05D008338 ORTHO05D000921 3.1e-10 69.3 68 52.9
QL10p052249 Quercus lobata HOM05D003171 ORTHO05D000921 6.9e-10 68.2 112 34.8
CSS0000387 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.2e-09 67.4 141 29.8
CSS0041063 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.2e-09 67.4 141 29.8
Ciclev10013577m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.5e-09 67.0 95 38.9
PSO384G1197 Papaver somniferum HOM05D003171 ORTHO05D000921 1.5e-09 67.0 70 47.1
QL10p054458 Quercus lobata HOM05D003171 ORTHO05D000921 1.5e-09 67.0 112 34.8
Eucgr.F03745 Eucalyptus grandis HOM05D000665 ORTHO05D000285 2.0e-09 66.6 124 29.8
Dinv20825 Davidia involucrata HOM05D007209 ORTHO05D000921 3.4e-09 65.9 110 32.7
PGR031G0230 Punica granatum HOM05D003171 ORTHO05D000921 3.4e-09 65.9 99 30.3
CANSAT21G0626 Cannabis sativa HOM05D000665 ORTHO05D000921 4.5e-09 65.5 78 39.7
CSS0004715 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 5.8e-09 65.1 131 29.8
Eucgr.K03150 Eucalyptus grandis HOM05D000665 ORTHO05D000285 5.8e-09 65.1 126 33.3
Lj8P612T5 Lonicera japonica HOM05D008338 ORTHO05D000921 5.8e-09 65.1 56 57.1
Medtr8g085310 Medicago truncatula HOM05D001243 ORTHO05D000843 5.8e-09 65.1 124 29.8
PGR004G0260 Punica granatum HOM05D003171 ORTHO05D000921 5.8e-09 65.1 99 31.3
PGR142G2636 Punica granatum HOM05D003171 ORTHO05D000921 5.8e-09 65.1 99 31.3
GSVIVG01038689001 Vitis vinifera HOM05D000665 ORTHO05D000921 5.8e-09 65.1 95 34.7
Eucgr.C01733 Eucalyptus grandis HOM05D000665 ORTHO05D000285 7.6e-09 64.7 126 33.3
PGR042G3316 Punica granatum HOM05D003171 ORTHO05D000921 7.6e-09 64.7 99 31.3
PGR042G0562 Punica granatum HOM05D003171 ORTHO05D000921 1.0e-08 64.3 99 31.3
PGR142G3043 Punica granatum HOM05D003171 ORTHO05D000921 1.0e-08 64.3 99 31.3
Rhsim02G0174000 Rhododendron simsii HOM05D021294 ORTHO05D000921 1.0e-08 64.3 97 33.0
CSS0008427 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.3e-08 63.9 140 28.6
PGR044G2193 Punica granatum HOM05D003171 ORTHO05D000921 1.3e-08 63.9 99 30.3
Eucgr.E03604 Eucalyptus grandis HOM05D000665 ORTHO05D000285 1.7e-08 63.5 107 34.6
TAR626G0805 Trochodendron aralioides HOM05D000665 ORTHO05D000285 1.7e-08 63.5 120 32.5
CSS0028686 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 2.2e-08 63.2 140 28.6
Lsat_1_v5_gn_5_73681 Lactuca sativa HOM05D003171 ORTHO05D000921 2.2e-08 63.2 118 31.4
CSS0029683 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 2.9e-08 62.8 131 29.0
CSS0047450 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 2.9e-08 62.8 131 29.0
TAR555G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 2.9e-08 62.8 106 35.8
Dinv43770 Davidia involucrata HOM05D000665 ORTHO05D000921 3.8e-08 62.4 119 33.6
FAN03G0665 Fragaria x ananassa HOM05D003171 ORTHO05D000921 4.9e-08 62.0 113 36.3
PGR031G2473 Punica granatum HOM05D003171 ORTHO05D000921 4.9e-08 62.0 99 30.3
Psat0s94g0040 Pisum sativum HOM05D000665 ORTHO05D000921 8.4e-08 61.2 65 44.6
Prupe.8G117400 Prunus persica HOM05D003171 ORTHO05D000921 8.4e-08 61.2 113 32.7
Dinv17018 Davidia involucrata HOM05D007209 ORTHO05D000921 1.1e-07 60.8 91 37.4
Dinv42966 Davidia involucrata HOM05D007209 ORTHO05D000921 1.1e-07 60.8 91 37.4
Dinv43133 Davidia involucrata HOM05D007209 ORTHO05D000921 1.1e-07 60.8 91 37.4
Potri.006G116400 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.1e-07 60.8 142 29.6
QL03p032583 Quercus lobata HOM05D000034 ORTHO05D000921 1.1e-07 60.8 112 30.4
QL04p024672 Quercus lobata HOM05D000034 ORTHO05D000921 1.1e-07 60.8 112 30.4
CiPaw.01G106700 Carya illinoinensis HOM05D003171 ORTHO05D000921 1.4e-07 60.5 108 32.4
Dinv02799 Davidia involucrata HOM05D000665 ORTHO05D000921 1.4e-07 60.5 119 31.9
Dinv39109 Davidia involucrata HOM05D000665 ORTHO05D000921 1.4e-07 60.5 119 32.8
TAR629G1791 Trochodendron aralioides HOM05D000665 ORTHO05D000921 1.4e-07 60.5 113 32.7
Eucgr.L02702 Eucalyptus grandis HOM05D000665 ORTHO05D000285 1.9e-07 60.1 134 26.9
Eucgr.L02923 Eucalyptus grandis HOM05D000665 ORTHO05D000285 1.9e-07 60.1 120 30.8
Lsat_1_v5_gn_1_68500 Lactuca sativa HOM05D003171 ORTHO05D000921 1.9e-07 60.1 96 32.3
MBI04_g27247_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000285 1.9e-07 60.1 98 35.7
QL10p052222 Quercus lobata HOM05D003171 ORTHO05D000921 1.9e-07 60.1 112 31.2
Actinidia03712 Actinidia chinensis HOM05D000665 ORTHO05D000921 2.5e-07 59.7 141 27.7
Eucgr.F01358 Eucalyptus grandis HOM05D000665 ORTHO05D000285 2.5e-07 59.7 123 26.0
PGR142G1171 Punica granatum HOM05D003171 ORTHO05D000921 2.5e-07 59.7 99 29.3
Rhsim03G0151700 Rhododendron simsii HOM05D000114 ORTHO05D000037 2.5e-07 59.7 116 33.6
ATR1098G111 Amborella trichopoda HOM05D000665 ORTHO05D011192 3.2e-07 59.3 129 31.8
Dinv23965 Davidia involucrata HOM05D000665 ORTHO05D000140 3.2e-07 59.3 118 25.4
FAN11G3401 Fragaria x ananassa HOM05D003171 ORTHO05D000921 3.2e-07 59.3 112 33.9
HanXRQChr13g0396681 Helianthus annuus HOM05D000665 ORTHO05D000921 3.2e-07 59.3 88 35.2
Nn3g16139 Nelumbo nucifera HOM05D000665 ORTHO05D000285 3.2e-07 59.3 121 28.1
Nn3g20404 Nelumbo nucifera HOM05D000665 ORTHO05D000285 3.2e-07 59.3 121 28.1
vmacro05024 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 3.2e-07 59.3 85 29.4
GSVIVG01035986001 Vitis vinifera HOM05D000665 ORTHO05D000140 3.2e-07 59.3 103 28.2
Dinv29345 Davidia involucrata HOM05D000665 ORTHO05D000921 4.2e-07 58.9 122 27.0
CSS0034992 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 5.5e-07 58.5 81 33.3
COL.COLO4_13504 Corchorus olitorius HOM05D000665 ORTHO05D000140 5.5e-07 58.5 103 29.1
Nn1g02527 Nelumbo nucifera HOM05D000665 ORTHO05D000921 5.5e-07 58.5 121 28.1
PGSC0003DMG400041107 Solanum tuberosum HOM05D000665 ORTHO05D003147 5.5e-07 58.5 87 31.0
CANSAT25G0660 Cannabis sativa HOM05D000665 ORTHO05D000921 7.1e-07 58.2 112 30.4
CANSAT54G0727 Cannabis sativa HOM05D007209 ORTHO05D000921 7.1e-07 58.2 112 29.5
Lj6g0024631 Lotus japonicus HOM05D003171 ORTHO05D000921 7.1e-07 58.2 96 33.3
Psat7g003000 Pisum sativum HOM05D000665 ORTHO05D000921 7.1e-07 58.2 63 41.3
Eucgr.E03640 Eucalyptus grandis HOM05D000665 ORTHO05D000285 9.3e-07 57.8 127 26.0
Eucgr.H04051 Eucalyptus grandis HOM05D000665 ORTHO05D000285 9.3e-07 57.8 116 29.3
Eucgr.L00423 Eucalyptus grandis HOM05D000665 ORTHO05D000285 9.3e-07 57.8 103 29.1
Hma1.2p1_2380F.1_g320966 Hydrangea macrophylla HOM05D000665 ORTHO05D000921 9.3e-07 57.8 122 28.7
Medtr1g055365 Medicago truncatula HOM05D000665 ORTHO05D000140 9.3e-07 57.8 95 30.5
Prupe.8G054800 Prunus persica HOM05D003171 ORTHO05D000921 9.3e-07 57.8 81 35.8
Solyc02g062220.2 Solanum lycopersicum HOM05D000665 ORTHO05D003147 9.3e-07 57.8 87 31.0
Thecc.05G306300 Theobroma cacao HOM05D000665 ORTHO05D000140 9.3e-07 57.8 79 31.6
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 9.3e-07 57.8 98 35.7
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 1.2e-06 57.4 109 30.3
Eucgr.B02784 Eucalyptus grandis HOM05D000665 ORTHO05D000285 1.2e-06 57.4 103 28.2
Potri.001G297801 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.2e-06 57.4 149 26.8
TPR.G10504 Trifolium pratense HOM05D000665 ORTHO05D000921 1.2e-06 57.4 78 37.2
TAR080G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 1.2e-06 57.4 129 28.7
CSS0005458 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 1.6e-06 57.0 81 33.3
CDE08G0696 Ceratophyllum demersum HOM05D000032 ORTHO05D007907 1.6e-06 57.0 79 36.7
Dinv44163 Davidia involucrata HOM05D007209 ORTHO05D000921 1.6e-06 57.0 91 36.3
PGR045G0004 Punica granatum HOM05D003171 ORTHO05D000921 1.6e-06 57.0 99 28.3
Eucgr.B02483 Eucalyptus grandis HOM05D000665 ORTHO05D000285 2.1e-06 56.6 129 29.5
Eucgr.B02958 Eucalyptus grandis HOM05D000665 ORTHO05D000285 2.1e-06 56.6 117 29.1
MBI19_g03252_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 2.1e-06 56.6 93 32.3
Oeu052247.2 Olea europaea HOM05D003171 ORTHO05D000921 2.1e-06 56.6 114 29.8
CANSAT80G2513 Cannabis sativa HOM05D000034 ORTHO05D000037 2.7e-06 56.2 90 33.3
Lsat_1_v5_gn_8_44140 Lactuca sativa HOM05D003171 ORTHO05D000921 2.7e-06 56.2 96 31.2
Lju50C12T3 Lonicera japonica HOM05D008338 ORTHO05D234560 2.7e-06 56.2 44 65.9
Nn2g14028 Nelumbo nucifera HOM05D000665 ORTHO05D000140 2.7e-06 56.2 108 28.7
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 2.7e-06 56.2 121 30.6
MELO3C015342.2 Cucumis melo HOM05D000665 ORTHO05D000140 3.5e-06 55.8 77 33.8
Dinv11570 Davidia involucrata HOM05D008473 ORTHO05D000921 3.5e-06 55.8 73 42.5
Eucgr.J02681 Eucalyptus grandis HOM05D000665 ORTHO05D000921 3.5e-06 55.8 79 35.4
FAN26G2385 Fragaria x ananassa HOM05D003171 ORTHO05D000921 3.5e-06 55.8 71 42.3
MBI02_g21882_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 3.5e-06 55.8 97 29.9
QL01p028137 Quercus lobata HOM05D000876 ORTHO05D000285 3.5e-06 55.8 106 32.1
QL02p030443 Quercus lobata HOM05D000876 ORTHO05D000285 3.5e-06 55.8 106 32.1
QL04p036904 Quercus lobata HOM05D000876 ORTHO05D000285 3.5e-06 55.8 106 32.1
QL09p002249 Quercus lobata HOM05D000876 ORTHO05D000285 3.5e-06 55.8 106 32.1
QL10p040122 Quercus lobata HOM05D000876 ORTHO05D000285 3.5e-06 55.8 106 32.1
Gohir.A08G211300 Gossypium hirsutum HOM05D000665 ORTHO05D000140 4.6e-06 55.5 80 30.0
Gohir.D08G228100 Gossypium hirsutum HOM05D000665 ORTHO05D000140 4.6e-06 55.5 80 30.0
Gorai.004G242300 Gossypium raimondii HOM05D000665 ORTHO05D000140 4.6e-06 55.5 80 30.0
PGR031G1431 Punica granatum HOM05D003171 ORTHO05D000921 4.6e-06 55.5 84 32.1
QL01p024703 Quercus lobata HOM05D000876 ORTHO05D000285 4.6e-06 55.5 106 32.1
TAR383G0921 Trochodendron aralioides HOM05D000665 ORTHO05D000140 4.6e-06 55.5 85 28.2
ATR0582G270 Amborella trichopoda HOM05D000665 ORTHO05D000140 7.9e-06 54.7 123 24.4
CARHR250430 Cardamine hirsuta HOM05D000665 ORTHO05D000140 7.9e-06 54.7 82 32.9
Haze_04223 Corylus avellana HOM05D000665 ORTHO05D000140 7.9e-06 54.7 97 27.8
MELO3C034280.2 Cucumis melo HOM05D007209 ORTHO05D000921 7.9e-06 54.7 95 30.5
ECA247G0616 Erigeron canadensis HOM05D000034 ORTHO05D000277 7.9e-06 54.7 78 34.6
Potri.003G006700 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.9e-06 54.7 117 28.2
Prupe.1G395600 Prunus persica HOM05D000665 ORTHO05D000140 7.9e-06 54.7 83 34.9
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 7.9e-06 54.7 94 33.0
Rhsim02G0174500 Rhododendron simsii HOM05D021294 ORTHO05D000921 7.9e-06 54.7 114 31.6


User provided reference genes

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