Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 6.6e-99 364.0 178 100.0
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 9.0e-56 220.7 180 59.4
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.7e-54 216.5 178 59.6
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 4.6e-52 208.4 176 57.4
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 4.6e-52 208.4 171 59.1
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 1.0e-51 207.2 181 55.2
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 6.0e-44 181.4 182 50.5
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 2.5e-42 176.0 175 49.7
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 4.3e-42 175.3 175 49.7
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 4.0e-40 168.7 176 48.9
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 1.2e-39 167.2 172 49.4
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 1.3e-38 163.7 176 46.6
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 1.1e-37 160.6 173 46.8
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 1.9e-37 159.8 176 47.2
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 1.9e-37 159.8 176 47.7
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 9.3e-37 157.5 174 45.4
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 1.6e-36 156.8 177 48.0
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 4.6e-36 155.2 174 44.8
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 4.6e-36 155.2 178 48.9
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 1.0e-35 154.1 178 46.1
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 2.3e-35 152.9 175 43.4
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 2.3e-35 152.9 179 45.8
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 3.0e-35 152.5 179 46.4
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 6.7e-35 151.4 173 48.0
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 1.1e-34 150.6 175 42.3
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 1.1e-34 150.6 178 45.5
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 2.5e-34 149.4 175 42.3
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 2.5e-34 149.4 175 46.3
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 4.3e-34 148.7 177 43.5
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 5.7e-34 148.3 121 58.7
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 5.7e-34 148.3 173 46.8
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 7.4e-34 147.9 173 43.4
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 7.4e-34 147.9 140 48.6
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 2.8e-33 146.0 180 43.9
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 6.3e-33 144.8 174 43.1
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 1.1e-32 144.1 140 49.3
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 1.8e-32 143.3 175 42.3
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 3.1e-32 142.5 184 44.0
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 4.1e-32 142.1 174 42.5
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 9.0e-32 141.0 175 44.0
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 1.5e-31 140.2 174 42.0
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 1.5e-31 140.2 116 56.0
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 2.0e-31 139.8 177 41.8
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 2.0e-31 139.8 140 47.9
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 5.9e-31 138.3 180 42.8
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 5.9e-31 138.3 180 42.8
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 5.9e-31 138.3 180 42.8
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 7.6e-31 137.9 175 41.1
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 3.8e-30 135.6 174 42.0
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 8.5e-30 134.4 175 41.1
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 1.4e-29 133.7 171 41.5
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 1.4e-29 133.7 115 53.9
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 1.4e-29 133.7 121 54.5
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 3.2e-29 132.5 135 46.7
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 5.5e-29 131.7 171 43.9
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 1.2e-28 130.6 176 40.9
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 1.2e-28 130.6 172 39.5
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 1.6e-28 130.2 174 40.8
Aa31LG10G17220 Aethionema arabicum HOM05D007181 ORTHO05D008722 2.7e-28 129.4 180 41.1
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 3.6e-28 129.0 140 48.6
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 3.6e-28 129.0 140 48.6
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 3.6e-28 129.0 140 48.6
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 6.1e-28 128.3 140 48.6
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 6.1e-28 128.3 175 37.7
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 7.9e-28 127.9 174 36.8
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 3.0e-27 125.9 171 38.6
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 3.0e-27 125.9 174 39.1
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 3.9e-27 125.6 174 39.7
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 5.1e-27 125.2 169 38.5
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 5.1e-27 125.2 140 44.3
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 8.8e-27 124.4 178 38.8
TPR.G19095 Trifolium pratense HOM05D007181 ORTHO05D008722 1.9e-26 123.2 175 38.9
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 3.3e-26 122.5 170 38.2
Glyma.19G160000 Glycine max HOM05D007181 ORTHO05D008722 4.3e-26 122.1 174 39.1
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 7.4e-26 121.3 118 49.2
THA.LOC104817569 Tarenaya hassleriana HOM05D007181 ORTHO05D008722 1.3e-25 120.6 176 39.8
Pp3c24_16150 Physcomitrium patens HOM05D007181 ORTHO05D008722 1.7e-25 120.2 127 40.2
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 3.7e-25 119.0 173 38.7
MD11G1277900 Malus domestica HOM05D007181 ORTHO05D008722 6.3e-25 118.2 169 37.3
PGR044G0699 Punica granatum HOM05D007181 ORTHO05D008722 6.3e-25 118.2 177 37.3
Carub.0005s3001 Capsella rubella HOM05D007181 ORTHO05D008722 1.4e-24 117.1 151 40.4
SMO143G0136 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 1.8e-24 116.7 118 50.0
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 6.9e-24 114.8 87 57.5
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 9.1e-24 114.4 120 46.7
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 1.5e-23 113.6 140 42.9
Pp3c8_19140 Physcomitrium patens HOM05D007181 ORTHO05D008722 7.7e-23 111.3 128 39.1
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 1.0e-22 110.9 140 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2054 Anthoceros agrestis HOM05D007181 ORTHO05D008722 3.8e-22 109.0 128 40.6
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 3.8e-22 109.0 179 38.0
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 5.0e-22 108.6 173 38.2
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 1.4e-21 107.1 137 40.1
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 4.2e-21 105.5 84 52.4
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 9.4e-21 104.4 140 41.4
VMungo1215G0236 Vigna mungo HOM05D007181 ORTHO05D008722 3.6e-20 102.4 121 43.8
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 4.7e-20 102.1 137 41.6
Ca_20981_v3 Cicer arietinum L. HOM05D007181 ORTHO05D008722 4.7e-20 102.1 127 42.5
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 3.3e-18 95.9 137 36.5
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 1.3e-17 94.0 119 42.0
SHI10021 Sapria himalayana HOM05D007181 ORTHO05D008722 2.2e-17 93.2 87 54.0
TAR624G0264 Trochodendron aralioides HOM05D007181 ORTHO05D008722 3.7e-17 92.4 193 34.7
CARHR291580 Cardamine hirsuta HOM05D007181 ORTHO05D008722 6.3e-17 91.7 139 37.4
Mapoly0126s0033 Marchantia polymorpha HOM05D007181 ORTHO05D008722 2.0e-15 86.7 129 34.9
SMO203G0031 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 1.3e-14 84.0 60 61.7
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 3.8e-14 82.4 97 48.5
Psat3g061320 Pisum sativum HOM05D007181 ORTHO05D008722 2.5e-13 79.7 181 32.6
ATR0099G072 Amborella trichopoda HOM05D007181 ORTHO05D008722 3.6e-12 75.9 78 44.9
ECA248G1721 Erigeron canadensis HOM05D007181 ORTHO05D008722 9.7e-10 67.8 99 40.4
SMO203G0072 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 2.8e-09 66.2 44 65.9
CBR_g39816 Chara braunii HOM05D007181 ORTHO05D008722 1.8e-08 63.5 128 35.2
ATR0099G083 Amborella trichopoda HOM05D007181 ORTHO05D008722 6.5e-06 55.1 44 54.5


User provided reference genes

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