Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 1.7e-79 299.3 155 100.0
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 1.3e-31 140.2 164 55.5
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 1.3e-29 133.7 149 49.7
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 3.7e-29 132.1 157 52.9
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.5e-27 126.7 153 55.6
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.5e-27 126.7 153 55.6
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 4.5e-27 125.2 158 46.2
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 3.8e-26 122.1 143 52.4
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 3.8e-26 122.1 167 45.5
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 3.8e-26 122.1 170 45.3
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 4.9e-26 121.7 168 46.4
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 4.2e-25 118.6 164 44.5
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 7.1e-25 117.9 173 45.7
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 9.3e-25 117.5 164 43.9
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.2e-24 117.1 164 43.9
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.0e-23 114.0 179 41.9
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 1.0e-23 114.0 158 46.2
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.3e-23 113.6 179 41.9
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 1.3e-23 113.6 162 43.2
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 1.8e-23 113.2 148 46.6
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 1.8e-23 113.2 139 51.8
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.9e-23 112.1 160 45.0
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 6.7e-23 111.3 154 46.8
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 8.7e-23 110.9 160 48.1
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 8.7e-23 110.9 141 48.9
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 8.7e-23 110.9 157 45.2
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 4.3e-22 108.6 166 47.6
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 4.3e-22 108.6 157 46.5
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 7.4e-22 107.8 174 42.5
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.6e-22 107.5 161 43.5
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 9.6e-22 107.5 155 43.9
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.3e-21 107.1 165 41.8
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 1.3e-21 107.1 162 45.7
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 1.6e-21 106.7 161 44.1
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 2.1e-21 106.3 141 48.2
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.8e-21 105.1 144 47.9
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.2e-21 104.8 147 46.3
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 1.1e-20 104.0 160 41.2
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.1e-20 104.0 157 41.4
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.1e-20 104.0 171 41.5
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 1.1e-20 104.0 175 40.6
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.4e-20 103.6 159 42.1
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 1.4e-20 103.6 147 42.2
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.4e-20 103.6 153 43.1
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.8e-20 103.2 143 45.5
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 4.0e-20 102.1 162 41.4
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.3e-20 101.7 172 41.3
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.9e-20 101.3 145 48.3
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 6.9e-20 101.3 172 41.3
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.9e-20 101.3 161 42.2
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 9.0e-20 100.9 162 43.8
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.5e-19 100.1 157 43.9
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.5e-19 100.1 153 42.5
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.0e-19 99.8 112 52.7
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.6e-19 99.4 151 42.4
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 2.6e-19 99.4 102 56.9
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.6e-19 99.4 155 43.2
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 7.6e-19 97.8 149 46.3
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 7.6e-19 97.8 155 40.0
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 1.3e-18 97.1 161 42.9
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 1.7e-18 96.7 156 42.3
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 2.9e-18 95.9 162 42.0
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 2.9e-18 95.9 153 39.2
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.9e-18 95.9 134 44.8
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 2.9e-18 95.9 156 41.0
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 3.8e-18 95.5 175 40.6
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 5.0e-18 95.1 152 40.8
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 6.5e-18 94.7 148 41.2
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 6.5e-18 94.7 157 43.9
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 6.5e-18 94.7 148 40.5
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 2.5e-17 92.8 151 40.4
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 4.2e-17 92.0 148 39.2
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 5.5e-17 91.7 115 48.7
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.5e-17 91.7 147 38.8
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.1e-17 91.3 146 38.4
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 7.1e-17 91.3 170 40.6
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.3e-17 90.9 146 39.0
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 1.2e-16 90.5 139 42.4
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.6e-16 90.1 156 41.7
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.1e-16 89.7 146 37.7
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 2.7e-16 89.4 148 35.8
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 2.7e-16 89.4 162 40.7
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 3.5e-16 89.0 141 42.6
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 3.5e-16 89.0 118 48.3
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 7.9e-16 87.8 153 37.9
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 7.9e-16 87.8 166 36.1
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 2.3e-15 86.3 155 44.5
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 3.0e-15 85.9 169 33.7
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 6.7e-15 84.7 115 42.6
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 1.1e-14 84.0 153 40.5
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.5e-14 83.6 151 41.7
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 1.5e-14 83.6 158 36.7
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 1.9e-14 83.2 152 36.8
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 2.5e-14 82.8 152 39.5
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 5.7e-14 81.6 146 40.4
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 5.7e-14 81.6 142 36.6
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 5.7e-14 81.6 158 34.8
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-13 80.1 107 43.9
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 2.8e-13 79.3 147 44.2
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 4.8e-13 78.6 141 44.0
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.8e-13 78.6 147 42.9
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 4.8e-13 78.6 112 45.5
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.3e-13 78.2 105 50.5
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 6.3e-13 78.2 113 44.2
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.2e-13 77.8 120 43.3
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.8e-12 76.6 149 39.6
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 3.1e-12 75.9 155 38.1
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 4.1e-12 75.5 152 36.8
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 5.3e-12 75.1 146 41.1
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 5.3e-12 75.1 147 40.1
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 5.3e-12 75.1 147 40.1
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 5.3e-12 75.1 103 45.6
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 5.3e-12 75.1 162 36.4
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 5.3e-12 75.1 147 36.1
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 6.9e-12 74.7 108 38.0
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 9.0e-12 74.3 153 37.3
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.2e-11 73.9 99 48.5
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.2e-11 73.9 149 38.9
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 2.6e-11 72.8 144 40.3
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 3.4e-11 72.4 146 39.0
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 3.4e-11 72.4 147 39.5
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 4.5e-11 72.0 93 48.4
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 5.9e-11 71.6 107 40.2
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 7.7e-11 71.2 100 46.0
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 1.0e-10 70.9 146 40.4
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 1.0e-10 70.9 138 38.4
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 1.0e-10 70.9 138 38.4
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 1.0e-10 70.9 146 39.7
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 5.0e-10 68.6 145 37.9
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 8.5e-10 67.8 143 33.6
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 1.1e-09 67.4 160 31.9
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 9.4e-09 64.3 145 37.2
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 1.2e-08 63.9 160 32.5
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 2.1e-08 63.2 126 38.9
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 2.1e-08 63.2 146 36.3
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 1.0e-07 60.8 143 39.2
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 1.0e-07 60.8 143 39.2
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 1.8e-07 60.1 145 35.2
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 1.8e-07 60.1 145 35.2
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 5.1e-07 58.5 154 32.5
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 6.7e-07 58.2 144 34.7
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 6.7e-07 58.2 144 34.7
ATR0693G249 Amborella trichopoda HOM05D001624 ORTHO05D001530 1.1e-06 57.4 157 33.8
BcaNung04419 Brassica carinata HOM05D007765 ORTHO05D009826 4.3e-06 55.5 149 32.2
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 5.7e-06 55.1 169 29.6


User provided reference genes

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