Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1097T8 Lonicera japonica HOM05D002685 ORTHO05D001487 1.3e-52 209.5 109 100.0
Lj1C600T9 Lonicera japonica HOM05D002685 ORTHO05D001487 1.2e-34 149.8 107 78.5
Lj1C600G7 Lonicera japonica HOM05D002685 ORTHO05D001487 2.2e-33 145.6 105 77.1
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 8.5e-33 143.7 105 75.2
Cpa.g.sc96.31 Carica papaya HOM05D002685 ORTHO05D001487 4.5e-26 121.3 100 63.0
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 1.0e-25 120.2 98 62.2
CSS0035629 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 8.6e-25 117.1 116 56.9
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 8.6e-25 117.1 99 58.6
TWI75G0855 Tripterygium wilfordii HOM05D002685 ORTHO05D001487 1.5e-24 116.3 98 60.2
CiPaw.05G105900 Carya illinoinensis HOM05D002685 ORTHO05D001487 1.9e-24 115.9 97 61.9
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 3.3e-24 115.2 99 58.6
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 3.3e-24 115.2 97 57.7
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 7.2e-24 114.0 99 59.6
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 7.2e-24 114.0 99 58.6
Potri.003G167500 Populus trichocarpa HOM05D002685 ORTHO05D001487 7.2e-24 114.0 109 54.1
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 9.5e-24 113.6 99 59.6
PGR119G2530 Punica granatum HOM05D002685 ORTHO05D001487 1.2e-23 113.2 109 52.3
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 2.1e-23 112.5 98 59.2
Sabra03G0122800 Salix brachista HOM05D002685 ORTHO05D001487 2.8e-23 112.1 109 52.3
Sc14g0009180 Simmondsia chinensis HOM05D002685 ORTHO05D001487 4.7e-23 111.3 109 49.5
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 8.0e-23 110.5 99 58.6
vmacro01042 Vaccinium macrocarpon HOM05D002685 ORTHO05D001487 1.0e-22 110.2 100 57.0
Dinv11706 Davidia involucrata HOM05D002685 ORTHO05D001487 4.0e-22 108.2 89 62.9
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 4.0e-22 108.2 98 56.1
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 4.0e-22 108.2 108 54.6
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 8.9e-22 107.1 104 57.7
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 2.0e-21 105.9 102 55.9
DCAR_024650 Daucus carota HOM05D002685 ORTHO05D001487 2.6e-21 105.5 105 54.3
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 3.4e-21 105.1 116 51.7
PGSC0003DMG400041029 Solanum tuberosum HOM05D002685 ORTHO05D001487 3.4e-21 105.1 125 49.6
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 4.4e-21 104.8 97 55.7
PSO478G3563 Papaver somniferum HOM05D002685 ORTHO05D001487 4.4e-21 104.8 104 52.9
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 5.7e-21 104.4 98 55.1
TAR365G1211 Trochodendron aralioides HOM05D002685 ORTHO05D001487 5.7e-21 104.4 93 58.1
Haze_12458 Corylus avellana HOM05D002685 ORTHO05D001487 1.3e-20 103.2 98 56.1
Prupe.1G221500 Prunus persica HOM05D002685 ORTHO05D001487 1.3e-20 103.2 98 54.1
Sopen06g028800 Solanum pennellii HOM05D002685 ORTHO05D001487 1.3e-20 103.2 125 48.8
Manes.13G007700 Manihot esculenta HOM05D002685 ORTHO05D001487 2.2e-20 102.4 97 54.6
PSO017G3972 Papaver somniferum HOM05D002685 ORTHO05D001487 1.1e-19 100.1 98 53.1
Gohir.D10G237708 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.4e-19 99.8 99 54.5
Cfa009398 Carpinus fangiana HOM05D002685 ORTHO05D001487 1.8e-19 99.4 98 53.1
Gorai.001G075700 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.8e-19 99.4 99 55.6
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 2.4e-19 99.0 98 52.0
Lsat_1_v5_gn_4_2061 Lactuca sativa HOM05D002685 ORTHO05D001487 2.4e-19 99.0 104 51.9
Solyc06g072430.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 4.1e-19 98.2 125 48.0
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 7.0e-19 97.4 98 52.0
CsaV3_4G002950 Cucumis sativus L. HOM05D002685 ORTHO05D001487 9.2e-19 97.1 98 50.0
Nitab4.5_0003251g0040 Nicotiana tabacum HOM05D002685 ORTHO05D001487 9.2e-19 97.1 113 50.4
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 1.2e-18 96.7 116 47.4
Nn8g41102 Nelumbo nucifera HOM05D002685 ORTHO05D001487 1.2e-18 96.7 93 51.6
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 1.2e-18 96.7 105 52.4
Actinidia25109 Actinidia chinensis HOM05D002685 ORTHO05D001487 1.6e-18 96.3 98 49.0
TAR622G0718 Trochodendron aralioides HOM05D002685 ORTHO05D001487 2.0e-18 95.9 92 52.2
Actinidia08046 Actinidia chinensis HOM05D002685 ORTHO05D001487 2.7e-18 95.5 97 51.5
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 2.7e-18 95.5 105 50.5
Lj1g0010375 Lotus japonicus HOM05D002685 ORTHO05D001487 2.7e-18 95.5 105 46.7
Nitab4.5_0000337g0100 Nicotiana tabacum HOM05D002685 ORTHO05D001487 2.7e-18 95.5 113 51.3
MELO3C017749.2 Cucumis melo HOM05D002685 ORTHO05D001487 3.5e-18 95.1 98 52.0
Nitab4.5_0003401g0080 Nicotiana tabacum HOM05D002685 ORTHO05D001487 4.5e-18 94.7 113 50.4
CDE05G2679 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 5.9e-18 94.4 97 50.5
Oeu058906.1 Olea europaea HOM05D002685 ORTHO05D001487 5.9e-18 94.4 92 59.8
Solyc10g084170.1 Solanum lycopersicum HOM05D002685 ORTHO05D001487 5.9e-18 94.4 113 47.8
Cc09_g08480 Coffea canephora HOM05D002685 ORTHO05D001487 7.8e-18 94.0 102 52.9
Nitab4.5_0004556g0030 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.0e-17 93.6 113 48.7
SalBow2G0376 Salvia bowleyana HOM05D002685 ORTHO05D001487 1.3e-17 93.2 99 53.5
RcHm_v2.0_Chr4g0429621 Rosa chinensis HOM05D002685 ORTHO05D001487 1.7e-17 92.8 104 49.0
Sopen10g033620 Solanum pennellii HOM05D002685 ORTHO05D001487 2.3e-17 92.4 113 46.9
Ciclev10031823m.g Citrus clementina HOM05D002685 ORTHO05D001487 2.9e-17 92.0 101 48.5
FAN17G2673 Fragaria x ananassa HOM05D002685 ORTHO05D001487 3.8e-17 91.7 104 48.1
CAN.G65.93 Capsicum annuum HOM05D002685 ORTHO05D001487 8.6e-17 90.5 99 53.5
FvH4_4g23260 Fragaria vesca HOM05D002685 ORTHO05D001487 8.6e-17 90.5 104 47.1
FAN12G0439 Fragaria x ananassa HOM05D002685 ORTHO05D001487 8.6e-17 90.5 104 47.1
PGSC0003DMG400010462 Solanum tuberosum HOM05D002685 ORTHO05D001487 8.6e-17 90.5 114 46.5
Ca_07143_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 1.5e-16 89.7 87 50.6
SGA_v2.0_scaffold68G22835 Striga asiatica HOM05D002685 ORTHO05D001487 1.5e-16 89.7 98 52.0
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 1.9e-16 89.4 99 47.5
CDE05G0851 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 2.5e-16 89.0 96 47.9
MBI07_g36513_MAGBIO Magnolia biondii HOM05D002685 ORTHO05D001487 2.5e-16 89.0 97 50.5
TPR.G27398 Trifolium pratense HOM05D002685 ORTHO05D001487 2.5e-16 89.0 87 48.3
SalBow2G0840 Salvia bowleyana HOM05D002685 ORTHO05D001487 4.3e-16 88.2 99 51.5
SHI04197 Sapria himalayana HOM05D002685 ORTHO05D001487 4.3e-16 88.2 100 47.0
Ca_07157_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 7.3e-16 87.4 87 50.6
Migut.K01013 Erythranthe guttata HOM05D002685 ORTHO05D001487 7.3e-16 87.4 100 52.0
Nn3g18831 Nelumbo nucifera HOM05D002685 ORTHO05D001487 9.5e-16 87.0 92 51.1
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 1.2e-15 86.7 92 45.7
AUR62028890 Chenopodium quinoa HOM05D002685 ORTHO05D001487 1.2e-15 86.7 94 45.7
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 1.6e-15 86.3 91 47.3
Medtr7g022490 Medicago truncatula HOM05D002685 ORTHO05D001487 2.8e-15 85.5 98 43.9
Medtr7g022790 Medicago truncatula HOM05D002685 ORTHO05D001487 2.8e-15 85.5 98 43.9
AUR62005663 Chenopodium quinoa HOM05D002685 ORTHO05D001487 3.6e-15 85.1 101 44.6
arahy.Tifrunner.gnm1.ann1.D7MIWJ Arachis hypogaea HOM05D002685 ORTHO05D001487 4.7e-15 84.7 99 43.4
arahy.Tifrunner.gnm1.ann1.G65IU1 Arachis hypogaea HOM05D002685 ORTHO05D001487 4.7e-15 84.7 99 43.4
Phvul.008G016500 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 4.7e-15 84.7 103 44.7
TPR.G2897 Trifolium pratense HOM05D002685 ORTHO05D001487 1.4e-14 83.2 87 47.1
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 1.8e-14 82.8 98 43.9
Psat3g186840 Pisum sativum HOM05D002685 ORTHO05D001487 1.8e-14 82.8 98 42.9
SGA_v2.0_scaffold96G29063 Striga asiatica HOM05D002685 ORTHO05D001487 1.8e-14 82.8 98 49.0
MSTRG.15538 Avicennia marina HOM05D002685 ORTHO05D001487 5.2e-14 81.3 90 51.1
Psat3g186880 Pisum sativum HOM05D002685 ORTHO05D001487 5.2e-14 81.3 87 44.8
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 6.8e-14 80.9 99 42.4
VMungo1383G1702 Vigna mungo HOM05D002685 ORTHO05D001487 6.8e-14 80.9 98 43.9
HanXRQChr12g0362251 Helianthus annuus HOM05D002685 ORTHO05D001487 2.6e-13 79.0 106 49.1
Phvul.008G016600 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 2.6e-13 79.0 98 41.8
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 3.4e-13 78.6 99 43.4
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 3.4e-13 78.6 71 56.3
Psat3g186800 Pisum sativum HOM05D002685 ORTHO05D001487 4.4e-13 78.2 98 40.8
QL03p029584 Quercus lobata HOM05D002685 ORTHO05D001487 9.8e-13 77.0 64 56.2
Glyma.18G284900 Glycine max HOM05D002685 ORTHO05D001487 1.3e-12 76.6 111 40.5
Glyma.18G285100 Glycine max HOM05D002685 ORTHO05D001487 1.7e-12 76.3 111 39.6
ATR0582G338 Amborella trichopoda HOM05D002685 ORTHO05D001487 2.9e-12 75.5 100 45.0
Lalb_Chr10g0092001 Lupinus albus HOM05D002685 ORTHO05D001487 3.7e-12 75.1 89 42.7
Psat3g186080 Pisum sativum HOM05D002685 ORTHO05D001487 1.4e-11 73.2 102 42.2
Nn4g26113 Nelumbo nucifera HOM05D002685 ORTHO05D001487 5.4e-11 71.2 66 50.0
unitig_62.g23633 Utricularia gibba HOM05D002685 ORTHO05D001487 5.4e-11 71.2 93 43.0
unitig_52.g17421 Utricularia gibba HOM05D002685 ORTHO05D001487 2.7e-10 68.9 99 42.4
Nn7g37581 Nelumbo nucifera HOM05D002685 ORTHO05D001487 6.6e-09 64.3 62 43.5
CDE02G4607 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 8.6e-09 63.9 72 48.6
QL05p082393 Quercus lobata HOM05D002685 ORTHO05D001487 1.5e-08 63.2 62 46.8
VMungo1383G0720 Vigna mungo HOM05D002685 ORTHO05D001487 1.9e-08 62.8 103 38.8
HPP92_006390 Vanilla planifolia HOM05D002685 ORTHO05D001487 4.3e-08 61.6 109 35.8
CDE05G2469 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 1.2e-07 60.1 75 44.0
TPR.G15496 Trifolium pratense HOM05D002685 ORTHO05D001487 2.1e-07 59.3 57 54.4
Glyma.02G096400 Glycine max HOM05D002685 ORTHO05D001487 2.8e-07 58.9 105 32.4
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.6e-07 58.5 99 37.4
AUR62021868 Chenopodium quinoa HOM05D002685 ORTHO05D001487 1.1e-06 57.0 93 32.3
PSO210G2053 Papaver somniferum HOM05D002685 ORTHO05D001487 1.4e-06 56.6 67 37.3
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 1.8e-06 56.2 75 38.7
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 1.8e-06 56.2 75 37.3
SEGI_09232 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.8e-06 56.2 124 33.1
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 2.3e-06 55.8 105 31.4
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 2.3e-06 55.8 93 30.1
PSO302G0162 Papaver somniferum HOM05D002685 ORTHO05D001487 2.3e-06 55.8 67 37.3
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 3.1e-06 55.5 98 27.6
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.1e-06 55.5 124 33.1
CDE02G1656 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 4.0e-06 55.1 93 33.3
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 5.2e-06 54.7 80 32.5
CiPaw.09G102100 Carya illinoinensis HOM05D002685 ORTHO05D001487 5.2e-06 54.7 93 30.1
QL05p069750 Quercus lobata HOM05D002685 ORTHO05D001487 6.8e-06 54.3 102 28.4


User provided reference genes

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